PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989830.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 379aa MW: 42712.1 Da PI: 6.4244

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	98	143	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_024989830.1 98 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 143 899***************************.*********996 PP
2	Myb_DNA-binding	54.9	2.1e-17	150	193	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++++ eE+e+l a++++G++ W++Iar ++ gRt++ +k++w+ XP_024989830.1 150 RKAFSDEEEERLMTAHRMYGNK-WALIARLFP-GRTDNAVKNHWHV 193 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGMIFSDSFR SLSLNNHNPS SNPNDHFIHA HFNSSSSSST SSLDFPLMIT ASTSFHNQDE 60 EDDEEEQEEL DLNLSGSCTF NNGKMRPVGG QSTKTCARGH WRPAEDAKLK ELVALYGPQN 120 WNLIAEKLEG RSGKSCRLRW FNQLDPRINR KAFSDEEEER LMTAHRMYGN KWALIARLFP 180 GRTDNAVKNH WHVIMARKYR EQSNAHRKRR MLISQNQTVS RSETTSATPP PPPTDAPPAY 240 NGYFPQQPPF GSVSGAKNNN QMMMMMDLFS TKNTSWMMGR SSNTNFHDHP HDDDDDDDDN 300 EHAVVPLMMM NHHHQYYHHQ FYTSGSSSFS SGADNSTVST THSVSAVTPA PQVLQSQQFS 360 EANIDISPPL IDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGMIFSDSFR SLSLNNHNPS SNPNDHFIHA HFNSSSSSST SSLDFPLMIT ASTSFHNQDE  60
EDDEEEQEEL DLNLSGSCTF NNGKMRPVGG QSTKTCARGH WRPAEDAKLK ELVALYGPQN  120
WNLIAEKLEG RSGKSCRLRW FNQLDPRINR KAFSDEEEER LMTAHRMYGN KWALIARLFP  180
GRTDNAVKNH WHVIMARKYR EQSNAHRKRR MLISQNQTVS RSETTSATPP PPPTDAPPAY  240
NGYFPQQPPF GSVSGAKNNN QMMMMMDLFS TKNTSWMMGR SSNTNFHDHP HDDDDDDDDN  300
EHAVVPLMMM NHHHQYYHHQ FYTSGSSSFS SGADNSTVST THSVSAVTPA PQVLQSQQFS  360
EANIDISPPL IDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-75	MYB family protein