PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989803.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 434aa MW: 49368.4 Da PI: 8.4647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	239	282	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+r+++++ +Lr l+P + K++Ka+i+ A+eYIk+L+ XP_024989803.1 239 VTERNRRKRMKDGLYTLRALVPRiS------KMDKAAIVGDAIEYIKELE 282 57*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MRVLLKILEL LRPLAENKAW DYCIVWKIGD DPSRCIEWIG CCCSGSQGVC KNVKEENDEI 60 ELHMPYLCKD TYIKHSLRTN ACEKLAMIPS YLPLYPGIHG EVAMSKQPFW LSNDLTGTQL 120 VVPVNGGLIE LFRTKFVPAD QSMIETLMAQ LGIIVDYGFH GKDSKTRLNP YPYHHIVPKL 180 ELLFPVPQPI SIDSTHVSQN RFIDESKNSL GYGNSGDGKE IRKVNHKIGK EQFQSKNLVT 240 ERNRRKRMKD GLYTLRALVP RISKMDKAAI VGDAIEYIKE LEKNVKELQD ELKELEEQDC 300 MMNNFEAEVC KPKRAYESST QTSPKPHFRV SNVADKKISE VQVEVHQIGA RDFLLKLICS 360 HKSDGFLRIL EMVDSLGLEV IDVNVTTCHS RVLNILKVKA KGKEVSAKNL KDSLLLGWSC 420 LKVDREKKPS MRAL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MRVLLKILEL LRPLAENKAW DYCIVWKIGD DPSRCIEWIG CCCSGSQGVC KNVKEENDEI  60
ELHMPYLCKD TYIKHSLRTN ACEKLAMIPS YLPLYPGIHG EVAMSKQPFW LSNDLTGTQL  120
VVPVNGGLIE LFRTKFVPAD QSMIETLMAQ LGIIVDYGFH GKDSKTRLNP YPYHHIVPKL  180
ELLFPVPQPI SIDSTHVSQN RFIDESKNSL GYGNSGDGKE IRKVNHKIGK EQFQSKNLVT  240
ERNRRKRMKD GLYTLRALVP RISKMDKAAI VGDAIEYIKE LEKNVKELQD ELKELEEQDC  300
MMNNFEAEVC KPKRAYESST QTSPKPHFRV SNVADKKISE VQVEVHQIGA RDFLLKLICS  360
HKSDGFLRIL EMVDSLGLEV IDVNVTTCHS RVLNILKVKA KGKEVSAKNL KDSLLLGWSC  420
LKVDREKKPS MRAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	4e-84	bHLH family protein