PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024989722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23851.5 Da PI: 5.2442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+lF++++++ +++ e+A++lgL rqV +WFqNrRa++k XP_024989722.1 28 RRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWK 79 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 26 | 117 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq+k+LE+ F++e+kLep++K e+areLgl+prqva+WFqnrRAR+k+kq+E+dy++Lk+ yd+l+++ e+L++e+++L ++lke XP_024989722.1 26 NNRRFSDEQIKSLESLFKMENKLEPRKKLEMARELGLHPRQVAIWFQNRRARWKSKQVEQDYTTLKADYDSLSDRFESLKNEKHALLQQLKE 117 579************************************************************************************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MLGDAQVLKK KNKNKNKNNN NNNNNNNRRF SDEQIKSLES LFKMENKLEP RKKLEMAREL 60 GLHPRQVAIW FQNRRARWKS KQVEQDYTTL KADYDSLSDR FESLKNEKHA LLQQLKEPHE 120 GSKLDLESGS ENGDTNLELN SSRPLEQDMA IYSDEDDLRK HKQKQELDEN IMEMEEAQEI 180 VSNFDLGSLF DQFSCSSNWW EL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 82 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-38 | HD-ZIP family protein |