PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989671.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 979aa MW: 111054 Da PI: 4.9894

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_024989671.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_024989671.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDES SIVEQPKFPT 240 TIEELEGERR ADKEARLRKQ DIAKNKIAQR QDAPSAILQA NKMNDPETVR KRPKMNLPTP 300 QIPDYELEHI AKFGLPALTD ELSEGSGATR ALLADYTQTP RQGMTPLRTP QRTPAGKQDA 360 IMMEAENQAR LRLSQTPLLG GENPDLHPSD FSGVTPKKKD IQTPNPMLTP SATPGGVSLT 420 PRIGMTPSRD GHAFGVTPKG TPIRDELHIN EEMEMHDSAK LELRRQADMR RNLRSGLTGL 480 PQPKNEYQIV VQPAPEDNEE QEAKIEEDMS DRMAREKAEE EARQQALLKK RSKVLQRELP 540 RPPVGSLDLI KNSLIRADED KSSFVPPTLI EQADEMIRKE LLSLLEHDNV KYPLDEKLEK 600 DKKKGSKRAG GKSVSIPAIE EFDEDELKEA DQMIKEEAKF LCEAMGHKDE DLDEFIEAHR 660 TCLNDIMYFP TRNGYGLSSV AGNMEKLAAF QEEFENVKKR MDDDTRKAQR LEQKIKLLTN 720 GYQMRAAKIW SQVEATFKQM DTAGTEYECF QALQRQEQLA ASNRINSIWE DVQKQKELEK 780 TLQNRYGDLL VEKERIYNLM EKYRQEAKIQ EEMAEKQRML QLAEAEAAAA NEEETKMAEA 840 ESEPQVEEAN QVADTSETAK VNDESSNEQR DVPSEAAQST NNQQTTDHQE LEEPMAVEPS 900 HDSSTQINAS EVSSQPTVEG HVDHPAIESN SVAADATQTV EGQVDHPAIE SNSVAADATQ 960 TVESNSETIE PKNPIVDES

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDES SIVEQPKFPT  240
TIEELEGERR ADKEARLRKQ DIAKNKIAQR QDAPSAILQA NKMNDPETVR KRPKMNLPTP  300
QIPDYELEHI AKFGLPALTD ELSEGSGATR ALLADYTQTP RQGMTPLRTP QRTPAGKQDA  360
IMMEAENQAR LRLSQTPLLG GENPDLHPSD FSGVTPKKKD IQTPNPMLTP SATPGGVSLT  420
PRIGMTPSRD GHAFGVTPKG TPIRDELHIN EEMEMHDSAK LELRRQADMR RNLRSGLTGL  480
PQPKNEYQIV VQPAPEDNEE QEAKIEEDMS DRMAREKAEE EARQQALLKK RSKVLQRELP  540
RPPVGSLDLI KNSLIRADED KSSFVPPTLI EQADEMIRKE LLSLLEHDNV KYPLDEKLEK  600
DKKKGSKRAG GKSVSIPAIE EFDEDELKEA DQMIKEEAKF LCEAMGHKDE DLDEFIEAHR  660
TCLNDIMYFP TRNGYGLSSV AGNMEKLAAF QEEFENVKKR MDDDTRKAQR LEQKIKLLTN  720
GYQMRAAKIW SQVEATFKQM DTAGTEYECF QALQRQEQLA ASNRINSIWE DVQKQKELEK  780
TLQNRYGDLL VEKERIYNLM EKYRQEAKIQ EEMAEKQRML QLAEAEAAAA NEEETKMAEA  840
ESEPQVEEAN QVADTSETAK VNDESSNEQR DVPSEAAQST NNQQTTDHQE LEEPMAVEPS  900
HDSSTQINAS EVSSQPTVEG HVDHPAIESN SVAADATQTV EGQVDHPAIE SNSVAADATQ  960
TVESNSETIE PKNPIVDES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein