PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989556.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 330aa MW: 37329.5 Da PI: 9.8804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	146	193	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L llP + kK++Ka++Le A +YI +Lq XP_024989556.1 146 QEHVLAERKRREKLAQRFISLSALLPGL-----KKMDKASVLEDASKYIVQLQ 193 67999*********************.....9***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MDIPSMEMEE PSRSMKQHQQ PCPYYSDSVD SFSSERFKGY PNMVTVNQSI QVSSINGDQD 60 KQQDYRPTKS SPFSPSYGSL SNTFTISFGD PTSPQETNPY QFYRGSKLKY LDAVTPKEEK 120 NLNDFLGSVE VTGRVRSTRR NHRQAQEHVL AERKRREKLA QRFISLSALL PGLKKMDKAS 180 VLEDASKYIV QLQTRVKELQ ETSVKGKDII HESVVPIRRS KFSGRHEDNG ASSSNDTNYL 240 PSSSTYNPEI KARTSGSKIL VRIFCGRSSA LVLKTLAEMQ RLHITIICCS VLPFSNTTQL 300 ITITAQMSDE MVITRKYIVK CLKLALSKFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	157	ERKRRE
2	153	158	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-42	bHLH family protein