PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024989509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 171aa MW: 19571.5 Da PI: 9.8418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.9 | 2.8e-06 | 14 | 40 | 7 | 36 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 7 erErrRRdriNsafeeLrellPkaskapsk 36 ++E+rRRd++++ +++L +ll + + + XP_024989509.1 14 AMEKRRRDHMKDLYSKLASLLHLQ---SYE 40 79******************9876...444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MKRGGSSSLR PSAAMEKRRR DHMKDLYSKL ASLLHLQSYE RMPLLALLDQ ATITLKQWKE 60 RVERMTARKQ ELQNERISGE SSHEHKLQVV QVSEMDSSLE VNLIISKADN VRKVELFRVL 120 SIIQQSGAEI VSCSSSCLGH NQHCTIHAQA FHTRLGFDTS LIEYRLKQLI S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 1e-22 | bHLH family protein |