PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989434.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 504aa MW: 56100.8 Da PI: 5.8265

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	304	349	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_024989434.1 304 NHVEAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVCYINEL 349 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MDDLIVSPSS SSSMVSFPTT TTPRPSDTIQ QKLQNLLQNQ SQPWAYAIFW QTFNDDSNGC 60 VSLSWGDGHF QNNNIADPDP DCRKSVLREI QALLGPENRD DAEWFYVISL TRSFTPGDGS 120 APGTAFGSNS MIWLSGVDQF QSFNCERTKE AQIHGFETLV CIPTPNGVVE MGSYNVIEES 180 WNLAHQVQSL FGGGSLKLNT HSDNHQNIIS FADMVLMAGG LQEEEGMNMI EFESTTPDDQ 240 MSKNIGKLCM NRNTSTAPTT TNAYLETASE HSDSDCQLVL ATSTEKRVQK KKGKKTGGRY 300 PPVNHVEAER QRREKLNQRF YALRSVVPNV SRMDKASLLA DAVCYINELK GKVEYLESQL 360 HRRNSTTQGK TKKVKLESAD TIDNHHLQSN SNTCSLYQTT RMSNKPSSRT ISMNKTTSKL 420 NNSSSFGEVE VKIVGEDAMI RVQSGNAGLP AAKLMDALRE MKAQIQHASM SCVNEIMLQD 480 VVVRIPDATD EEELKSDLIR RLDR

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MDDLIVSPSS SSSMVSFPTT TTPRPSDTIQ QKLQNLLQNQ SQPWAYAIFW QTFNDDSNGC  60
VSLSWGDGHF QNNNIADPDP DCRKSVLREI QALLGPENRD DAEWFYVISL TRSFTPGDGS  120
APGTAFGSNS MIWLSGVDQF QSFNCERTKE AQIHGFETLV CIPTPNGVVE MGSYNVIEES  180
WNLAHQVQSL FGGGSLKLNT HSDNHQNIIS FADMVLMAGG LQEEEGMNMI EFESTTPDDQ  240
MSKNIGKLCM NRNTSTAPTT TNAYLETASE HSDSDCQLVL ATSTEKRVQK KKGKKTGGRY  300
PPVNHVEAER QRREKLNQRF YALRSVVPNV SRMDKASLLA DAVCYINELK GKVEYLESQL  360
HRRNSTTQGK TKKVKLESAD TIDNHHLQSN SNTCSLYQTT RMSNKPSSRT ISMNKTTSKL  420
NNSSSFGEVE VKIVGEDAMI RVQSGNAGLP AAKLMDALRE MKAQIQHASM SCVNEIMLQD  480
VVVRIPDATD EEELKSDLIR RLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	8e-78	bHLH family protein