PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024989407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18749.6 Da PI: 9.3165 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g+ KKA LSvLCd+++av++fss+gklyey+s XP_024989407.1 9 KRIEDKSSRQVTFSKRRSGLNKKARQLSVLCDVDIAVVVFSSRGKLYEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 31.3 | 8.5e-12 | 119 | 159 | 44 | 84 |
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +Ls+ ++ qLe+++ +l +iRs+K++l+++ i++l +k XP_024989407.1 119 CDLSVPDMTQLEEEISAALMHIRSRKTQLMMKYISTLHEKV 159 589*********************************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence |
MGRRKLEMKR IEDKSSRQVT FSKRRSGLNK KARQLSVLCD VDIAVVVFSS RGKLYEYCSG 60 RTDSVGLILS RYQKSCLQAE ERTTREGGSS DTGFRNQCSR FQTCKELLQS VERLVEEPCD 120 LSVPDMTQLE EEISAALMHI RSRKTQLMMK YISTLHEKVD GIW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10140.4 | 8e-36 | MIKC_MADS family protein |