PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989407.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 163aa    MW: 18749.6 Da    PI: 9.3165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92.1e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ks rqvtfskRr g+ KKA  LSvLCd+++av++fss+gklyey+s
  XP_024989407.1  9 KRIEDKSSRQVTFSKRRSGLNKKARQLSVLCDVDIAVVVFSSRGKLYEYCS 59
                    79***********************************************96 PP

2K-box31.38.5e-121191594484
           K-box  44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      +Ls+ ++ qLe+++  +l +iRs+K++l+++ i++l +k 
  XP_024989407.1 119 CDLSVPDMTQLEEEISAALMHIRSRKTQLMMKYISTLHEKV 159
                     589*********************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MGRRKLEMKR IEDKSSRQVT FSKRRSGLNK KARQLSVLCD VDIAVVVFSS RGKLYEYCSG  60
RTDSVGLILS RYQKSCLQAE ERTTREGGSS DTGFRNQCSR FQTCKELLQS VERLVEEPCD  120
LSVPDMTQLE EEISAALMHI RSRKTQLMMK YISTLHEKVD GIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.48e-36MIKC_MADS family protein