PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024989404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23348.6 Da PI: 8.5897 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g+ KKA LSvLCd+++av++fss+gklyey+s XP_024989404.1 9 KRIEDKSSRQVTFSKRRSGLNKKARQLSVLCDVDIAVVVFSSRGKLYEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 42.9 | 2.1e-15 | 120 | 173 | 45 | 98 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +Ls+ ++ qLe+++ +l +iRs+K++l+++ i++l +ke++l ee++++++++ XP_024989404.1 120 DLSVPDMTQLEEEISAALMHIRSRKTQLMMKYISTLHEKERKLTEETEEIKQQV 173 79************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MGRRKLEMKR IEDKSSRQVT FSKRRSGLNK KARQLSVLCD VDIAVVVFSS RGKLYEYCSG 60 RTDSVGLILS RYQKSCLQAE ERTTREGGSS DTGFRNQCSR FQTCKELLQS VERLVEEPCD 120 LSVPDMTQLE EEISAALMHI RSRKTQLMMK YISTLHEKER KLTEETEEIK QQVVLAKQND 180 DGGGGVNDLA TNQTNSPQLF TLPLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 2e-33 | MIKC_MADS family protein |