PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024989314.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 281aa    MW: 32907.3 Da    PI: 9.4169
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024989314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.4e-2055150190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                     k+Y++YA ++GF+vr +++k++ +ngei +r+fvC++eg+++++          e++ r+++ +r+gC+a++k +++k ++  +++++++ HnH+
  XP_024989314.1  55 KMYRTYADNAGFDVRLHAKKTN-KNGEIQTRWFVCNREGTPNKRFFYsmaiqsGERRYRNTNIKRCGCNACIKTHLTKdRSGCKIYEFVEAHNHA 148
                     68*************9987776.8999***************99877899987778888999**************998999************* PP

            FAR1  89 la 90 
                     l+
  XP_024989314.1 149 LF 150
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MIVSTGVPMH TLSEHEPEYD VEECSNGSKY FIPKVDDELK PKINDRFVSI NDVEKMYRTY  60
ADNAGFDVRL HAKKTNKNGE IQTRWFVCNR EGTPNKRFFY SMAIQSGERR YRNTNIKRCG  120
CNACIKTHLT KDRSGCKIYE FVEAHNHALF NTNDRRFSRK NRQMKYTDFK NVLNSSSYKV  180
GAIRAQRIQT ILNGGFEHNR CSEIDFKNFK RDAVACVGKK DVKLLINKLS NRRDIVPDYF  240
FEYKCNDHEL GAIFWADEVA RINYKEFGDV ISFDGMFRTN K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-19FAR1 family protein