PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989302.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 419aa MW: 46677.1 Da PI: 9.7521

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5e-33	58	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+el+ e+L++kv+ + ++++ +i+++d i++++P++Lp v++e +fF++ +k+y+tg+rk+r+++ + XP_024989302.1 58 LPAGVKFDPSDQELL-EHLEAKVRLDAHKIHPlideFIPTLDgengICYTHPEKLP-GVSKEGLVRHFFHRPSKAYTTGTRKRRKVHsetdggET 150 799**********.99*99985553333334555545556******.555556688**************84434444466 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl +++++g kk+Lv+y g+ +k+ekt+Wvmh+y+l XP_024989302.1 151 RWHKTGKTRPVLL-QTKVKGYKKILVLYanYGKPKKPEKTNWVMHQYHL 198 7********.9999******66689999*********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MTWCNDCTDT QPPVTIRKLP SSNDNNRVMD SNKTMPCPSC GHRIKCYEKA RIHDLPGLPA 60 GVKFDPSDQE LLEHLEAKVR LDAHKIHPLI DEFIPTLDGE NGICYTHPEK LPGVSKEGLV 120 RHFFHRPSKA YTTGTRKRRK VHSETDGGET RWHKTGKTRP VLLQTKVKGY KKILVLYANY 180 GKPKKPEKTN WVMHQYHLGN NEDEKEGELV VSKIFYQTQP RQCGNSSIVK DSLVKPNGRN 240 VHEGSHATNN ITTFIEYFGP SFVSFQQNVE HARDLNLHDG SSVGRRKAQV VLGAAQRRRR 300 FRCSAGACDS GCGATDSELV KAGALFSPKP VATTASNLVK TSTLFAFKPT TVAASISCLP 360 PTVGPQLKKF FEKHPSFKRS LSSFITFRNM ASSGGNHDVL AQIRAELEAA SRCIDLLDE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MTWCNDCTDT QPPVTIRKLP SSNDNNRVMD SNKTMPCPSC GHRIKCYEKA RIHDLPGLPA  60
GVKFDPSDQE LLEHLEAKVR LDAHKIHPLI DEFIPTLDGE NGICYTHPEK LPGVSKEGLV  120
RHFFHRPSKA YTTGTRKRRK VHSETDGGET RWHKTGKTRP VLLQTKVKGY KKILVLYANY  180
GKPKKPEKTN WVMHQYHLGN NEDEKEGELV VSKIFYQTQP RQCGNSSIVK DSLVKPNGRN  240
VHEGSHATNN ITTFIEYFGP SFVSFQQNVE HARDLNLHDG SSVGRRKAQV VLGAAQRRRR  300
FRCSAGACDS GCGATDSELV KAGALFSPKP VATTASNLVK TSTLFAFKPT TVAASISCLP  360
PTVGPQLKKF FEKHPSFKRS LSSFITFRNM ASSGGNHDVL AQIRAELEAA SRCIDLLDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	300	RRKAQVVLGAAQRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-121	NAC family protein