PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989282.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 971aa MW: 111885 Da PI: 9.3684

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.2e-19	297	392	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++Y+ +GF++r ++k ++ g + +r fvCskeg++ +++ + e++rr+++ +rtgCka+lkv+ k +g++ev+++ + HnH XP_024989282.1 297 NMYRKYGDVAGFDIRLGSKKLNSLGG-VQTRYFVCSKEGNPPKKEFDslevssGERKRRNTNFKRTGCKACLKVHYVKaSGQYEVYHFIEGHNHM 390 58*************999886655.99********999988999999999999*************999************** PP FAR1 89 la 90 l+ XP_024989282.1 391 LC 392 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence
MVLETGASCH MTPIRNCFST FKYFEGSPDN FEEVIPSATS TSDSKEEFLN DGRDQGHTIP 60 IMAPTRHNQR TIHPPNRYGD WDFANMSFTD QLEFALHVFK VKDDNRKKAC LIAKGFAQRN 120 GIEYENIFAS VDMLIASKDR SKIERLKDKL KSKFEMKDLS ATQNNLGMEI VQDKMSRTLR 180 LTQRAYIQMI LKRFNLNGAK TSTIQLQKHI KNTSEDCLKD DKGKAKTSKV LYASEFESPI 240 YAMVCTHPDL ARCVRVMQKS QEMGESPRGT KIWVPNVDSN ICPKVGDFFS LVESVENMYR 300 KYGDVAGFDI RLGSKKLNSL GGVQTRYFVC SKEGNPPKKE FDSLEVSSGE RKRRNTNFKR 360 TGCKACLKVH YVKASGQYEV YHFIEGHNHM LCRSEEKMFT HSRRQLDYKD RRNVYHASSS 420 KVGITQSRRM QLAMNGGLVA SGGTARDHMN FRRDIMLFVG NKDAQMLINK MSKRREHCSE 480 YFFEYKCDEK ELIAIFWADK TARMNYKHFG DTISFDATFR TNKHAMIFVP FVAIDNHKKS 540 VVVGASLIRN ESVINFTWVL NVFMKAHGTQ PQFVITDQCA AMKQAIPIVF SESTHRLCMW 600 HITKKVKEKI RDHLAHGTPF KSKFNKLVWN VHLSPEYFEE KWNALMDEFG LRGHSWFEEM 660 SESINSFFNV YTKYXNDLVY FLNTFDDAIE XQRKEHCSLE VVTRTTIPKL LSPSKIEVQV 720 ANVYTKTMFF EVQKEMNKAV WFCGVVDVVE VGDKMIYSIT HKNKNSEIKA TYKVVHDVGD 780 DSFDCSCNHF VHNGILCRHA FKVMLNSXVQ CIPEKYILPR WRRELVPVEL LPARVRYGEM 840 DVEKQALMNQ ATSMFDLIIG RVRNDKGSLT EFVERLERLG DEISVDIPIL TGTEQKRNDI 900 QELLCVSKHE SVDVLPPKGI RNKGCGTRKR LVGISEKISM NAKKPKRLCR TCDKMGWHDS 960 RNCPSKGDSN K

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence

MVLETGASCH MTPIRNCFST FKYFEGSPDN FEEVIPSATS TSDSKEEFLN DGRDQGHTIP  60
IMAPTRHNQR TIHPPNRYGD WDFANMSFTD QLEFALHVFK VKDDNRKKAC LIAKGFAQRN  120
GIEYENIFAS VDMLIASKDR SKIERLKDKL KSKFEMKDLS ATQNNLGMEI VQDKMSRTLR  180
LTQRAYIQMI LKRFNLNGAK TSTIQLQKHI KNTSEDCLKD DKGKAKTSKV LYASEFESPI  240
YAMVCTHPDL ARCVRVMQKS QEMGESPRGT KIWVPNVDSN ICPKVGDFFS LVESVENMYR  300
KYGDVAGFDI RLGSKKLNSL GGVQTRYFVC SKEGNPPKKE FDSLEVSSGE RKRRNTNFKR  360
TGCKACLKVH YVKASGQYEV YHFIEGHNHM LCRSEEKMFT HSRRQLDYKD RRNVYHASSS  420
KVGITQSRRM QLAMNGGLVA SGGTARDHMN FRRDIMLFVG NKDAQMLINK MSKRREHCSE  480
YFFEYKCDEK ELIAIFWADK TARMNYKHFG DTISFDATFR TNKHAMIFVP FVAIDNHKKS  540
VVVGASLIRN ESVINFTWVL NVFMKAHGTQ PQFVITDQCA AMKQAIPIVF SESTHRLCMW  600
HITKKVKEKI RDHLAHGTPF KSKFNKLVWN VHLSPEYFEE KWNALMDEFG LRGHSWFEEM  660
SESINSFFNV YTKYXNDLVY FLNTFDDAIE XQRKEHCSLE VVTRTTIPKL LSPSKIEVQV  720
ANVYTKTMFF EVQKEMNKAV WFCGVVDVVE VGDKMIYSIT HKNKNSEIKA TYKVVHDVGD  780
DSFDCSCNHF VHNGILCRHA FKVMLNSXVQ CIPEKYILPR WRRELVPVEL LPARVRYGEM  840
DVEKQALMNQ ATSMFDLIIG RVRNDKGSLT EFVERLERLG DEISVDIPIL TGTEQKRNDI  900
QELLCVSKHE SVDVLPPKGI RNKGCGTRKR LVGISEKISM NAKKPKRLCR TCDKMGWHDS  960
RNCPSKGDSN K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-71	FAR1 family protein