PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989264.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 684aa MW: 79344.4 Da PI: 8.2591

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.6e-20	68	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++YA +GF++r +++k ++ g + +r fvCskeg +++++ + e++rr+++ +rt Cka+lkv+ k +g++ev+++ + HnH XP_024989264.1 68 NMYRKYADVAGFDIRLASKKMNSLGG-VQTRFFVCSKEGIPSKKEFDslevssGERRRRNTNFKRTVCKACLKVHYVKeSGRYEVYHFIEAHNHM 161 58*************999886555.************999999999889999999***********999************** PP FAR1 89 la 90 l+ XP_024989264.1 162 LC 163 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MNEQGEGISS NEMPDICTNV DATEDVCYDA LSQKWGNHQG HELWIPKVDG NICPKVGEFF 60 SSVDSVENMY RKYADVAGFD IRLASKKMNS LGGVQTRFFV CSKEGIPSKK EFDSLEVSSG 120 ERRRRNTNFK RTVCKACLKV HYVKESGRYE VYHFIEAHNH MLCRSDEKLF TRSRRQLDYK 180 DRKNVYHASS SKVGITQSRR MQLAINRGLV SSGGTTRDHM NFRRDITLFI GNKDAQMLIN 240 KMNKRREHCP EYFFEYECDE KELIAIFWAD ETARMNYKHF GDTISFDATF QTNKHAMIFV 300 PFVAIDNHKK SVVVGASLIR NESIVNFTWI RDHLAHGTPF KSKFNKLVWN VHISPEIFEE 360 KWNALMDEFG LRRHSWFEEM YAIRESWIPA YFKDYPMSGL MKTTSRSESI NSFFNVYTKY 420 WNDLVYFLNT FDDAIEIQRK EHCSLEVASR TTIPKLLSPS KIEAQAAKVY TKTMFFEVQK 480 EMNKAIWYCG VVEVIEVGDK RIYSITHKNK NSEVKATYKV VHDVRDDSFD CSCNHFVRNG 540 IYFVATRLWY GEMDVEKQAL INQAISMFDL IIGRVRNDKG ALTEFVERLE RLGDEISMDI 600 PILTGTEQKR NDIQEFLCVS EPESVDVLPP TEIRNKGCGT GKRLVGMSER ISMNAKKPKR 660 LCRTCDKMGW HDSRNCPSQG DSTK

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MNEQGEGISS NEMPDICTNV DATEDVCYDA LSQKWGNHQG HELWIPKVDG NICPKVGEFF  60
SSVDSVENMY RKYADVAGFD IRLASKKMNS LGGVQTRFFV CSKEGIPSKK EFDSLEVSSG  120
ERRRRNTNFK RTVCKACLKV HYVKESGRYE VYHFIEAHNH MLCRSDEKLF TRSRRQLDYK  180
DRKNVYHASS SKVGITQSRR MQLAINRGLV SSGGTTRDHM NFRRDITLFI GNKDAQMLIN  240
KMNKRREHCP EYFFEYECDE KELIAIFWAD ETARMNYKHF GDTISFDATF QTNKHAMIFV  300
PFVAIDNHKK SVVVGASLIR NESIVNFTWI RDHLAHGTPF KSKFNKLVWN VHISPEIFEE  360
KWNALMDEFG LRRHSWFEEM YAIRESWIPA YFKDYPMSGL MKTTSRSESI NSFFNVYTKY  420
WNDLVYFLNT FDDAIEIQRK EHCSLEVASR TTIPKLLSPS KIEAQAAKVY TKTMFFEVQK  480
EMNKAIWYCG VVEVIEVGDK RIYSITHKNK NSEVKATYKV VHDVRDDSFD CSCNHFVRNG  540
IYFVATRLWY GEMDVEKQAL INQAISMFDL IIGRVRNDKG ALTEFVERLE RLGDEISMDI  600
PILTGTEQKR NDIQEFLCVS EPESVDVLPP TEIRNKGCGT GKRLVGMSER ISMNAKKPKR  660
LCRTCDKMGW HDSRNCPSQG DSTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-55	FAR1 family protein