PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989154.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 527aa MW: 61091.8 Da PI: 7.6205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	133	228	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k++++YAke+GF+vr s++k + + g+it+r +vCskeg+++++ + ++ r+++ + gC a+lk+++ k +++ev+k++++HnH XP_024989154.1 133 KMFRKYAKEAGFDVRLSNKKIN-KLGRITSRFYVCSKEGRPQSKYFDsldvlpGGRTIRNSNIKCSGCGACLKIHLVKePNQYEVYKFVEQHNHI 226 589***********998887.7777************999999999988999999999********9989************9 PP FAR1 89 la 90 l+ XP_024989154.1 227 LF 228 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MDPISFNETF VKDIFDEIDG INGKRKGFVL DREFATATND GTTQDKCNYS ARDEDGCIRQ 60 NETIPERSDS ITDGVSAEFD DDDVLSLSNE TEDYRYQDMG ETFDGSKYWF PSVDVKYKPK 120 VGDSFKSVES TEKMFRKYAK EAGFDVRLSN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL 180 DVLPGGRTIR NSNIKCSGCG ACLKIHLVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR 240 QLHYADHKNV FHGSSSKVGV TKSHRFMKAV KGGVDSSSGR KFVLSFFEYK CDDKELLAIF 300 WADETARSNF REFGDAISFD ATFRTNKHAM IFVPFVAIDN HKKSVVVGAA LIHNESLVDY 360 TWVLKAFVKA HGRQPRFVIT DQCESMKQAI PIAFPESRHR LCMWHISKKV NSKISNYLQH 420 RTQFVSEFNK LVWNVHLGPN EFEMQWNNLI EFYGLCGDPW FDELYDIRES WIPAYYKDYH 480 MSGLMKTTSR SESINAFFNV YAHFWHDLVV FLRSFDNAIE SQRATHG

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MDPISFNETF VKDIFDEIDG INGKRKGFVL DREFATATND GTTQDKCNYS ARDEDGCIRQ  60
NETIPERSDS ITDGVSAEFD DDDVLSLSNE TEDYRYQDMG ETFDGSKYWF PSVDVKYKPK  120
VGDSFKSVES TEKMFRKYAK EAGFDVRLSN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL  180
DVLPGGRTIR NSNIKCSGCG ACLKIHLVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR  240
QLHYADHKNV FHGSSSKVGV TKSHRFMKAV KGGVDSSSGR KFVLSFFEYK CDDKELLAIF  300
WADETARSNF REFGDAISFD ATFRTNKHAM IFVPFVAIDN HKKSVVVGAA LIHNESLVDY  360
TWVLKAFVKA HGRQPRFVIT DQCESMKQAI PIAFPESRHR LCMWHISKKV NSKISNYLQH  420
RTQFVSEFNK LVWNVHLGPN EFEMQWNNLI EFYGLCGDPW FDELYDIRES WIPAYYKDYH  480
MSGLMKTTSR SESINAFFNV YAHFWHDLVV FLRSFDNAIE SQRATHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-49	FAR1 family protein