PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989074.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bZIP

Protein Properties

Length: 391aa MW: 41036.4 Da PI: 9.1052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	68.2	1.3e-21	255	317	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL kv++L++eN +Lk+e+++l+ ++a+lk ++ XP_024989074.1 255 ERELKRERRKQSNRESARRSRLRKQAEAEELGGKVEALTSENLTLKSEINRLTVNSANLKLQN 317 89**********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MGNSEEAKDF KHDETSSPSL EQQQTGHVYP DWAAMQAYYG PRMAVPPYFS SAVASGHAPP 60 PYMWGPLQHM MPPYAAIYPH GGVYAHPGVT AASPMHIDSP AKSSGNSDRG LVKKLKGFDG 120 LAMSIGNDNG GSAEGGNDNG ISQSGETEGS SEGSDGNTTE GAKNGRKRSR GGSSTSSEVG 180 KTEQSDQLPS TNANGGSKKV TGLAVAPGKV LGKTIGVVIS ADSGTELELK KSPAAANMTS 240 AAVTMIPSTA ILQNERELKR ERRKQSNRES ARRSRLRKQA EAEELGGKVE ALTSENLTLK 300 SEINRLTVNS ANLKLQNAKL LEKLKNTQHE EAREDPRPDK KGSSLSTANL LSRVDNGSGS 360 VVRNDGEATG SGATLRQLLD GNPRADAVAA G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MGNSEEAKDF KHDETSSPSL EQQQTGHVYP DWAAMQAYYG PRMAVPPYFS SAVASGHAPP  60
PYMWGPLQHM MPPYAAIYPH GGVYAHPGVT AASPMHIDSP AKSSGNSDRG LVKKLKGFDG  120
LAMSIGNDNG GSAEGGNDNG ISQSGETEGS SEGSDGNTTE GAKNGRKRSR GGSSTSSEVG  180
KTEQSDQLPS TNANGGSKKV TGLAVAPGKV LGKTIGVVIS ADSGTELELK KSPAAANMTS  240
AAVTMIPSTA ILQNERELKR ERRKQSNRES ARRSRLRKQA EAEELGGKVE ALTSENLTLK  300
SEINRLTVNS ANLKLQNAKL LEKLKNTQHE EAREDPRPDK KGSSLSTANL LSRVDNGSGS  360
VVRNDGEATG SGATLRQLLD GNPRADAVAA G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	171	GRKRSRG
2	272	278	RRSRLRK
3	272	279	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	9e-93	bZIP family protein