PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989027.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 423aa MW: 46519.8 Da PI: 4.7509

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.5e-06	3	35	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++ +C++++ lC +C H+ XP_024989027.1 3 ALCDLCRVVRAVVYCKSDSAKLCFQCDNRVHSA 35 68****99****************99954 PP
2	CCT	62.7	1.1e-21	367	410	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_024989027.1 367 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 410 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEALCDLCRV VRAVVYCKSD SAKLCFQCDN RVHSANSLSR RHPRSILCDK CNSQPAVARY 60 VFDKTFVCQA CDLNENGCSS GQAHSLEELN SYTGCPSNEE FLKILSKVCD GGPDINIDQF 120 RPLTNLNVNE NLVGNGNNDG QMGLVASRLN ELASSLKFES WITDPSSVIP PHLTYLTPAD 180 KDPNPFFPEG SNLTEDASNL NNLGLNEGED LCDNVDLGDV TLNFDAGYEM FNCIPQAQTR 240 YPSEDRGLNC LVMEKNLSVT ESNSHIENAI EATSSGQQDC TTFQSSQVAA SANVMQAMNG 300 GMLLNPGCNR SAMNLGFPTV PNNMSLSLSN ITGESSAADY QDCGLSPMFF TGESPWESNF 360 ESSPQARDKA KMRYNEKKKT RTFGKQIRYA SRKARADTRK RVKGRFVKAG EAYDYDPLVT 420 TDF

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEALCDLCRV VRAVVYCKSD SAKLCFQCDN RVHSANSLSR RHPRSILCDK CNSQPAVARY  60
VFDKTFVCQA CDLNENGCSS GQAHSLEELN SYTGCPSNEE FLKILSKVCD GGPDINIDQF  120
RPLTNLNVNE NLVGNGNNDG QMGLVASRLN ELASSLKFES WITDPSSVIP PHLTYLTPAD  180
KDPNPFFPEG SNLTEDASNL NNLGLNEGED LCDNVDLGDV TLNFDAGYEM FNCIPQAQTR  240
YPSEDRGLNC LVMEKNLSVT ESNSHIENAI EATSSGQQDC TTFQSSQVAA SANVMQAMNG  300
GMLLNPGCNR SAMNLGFPTV PNNMSLSLSN ITGESSAADY QDCGLSPMFF TGESPWESNF  360
ESSPQARDKA KMRYNEKKKT RTFGKQIRYA SRKARADTRK RVKGRFVKAG EAYDYDPLVT  420
TDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	6e-82	CO-like family protein