PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989003.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 377aa MW: 42845 Da PI: 5.2713

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.3e-12	175	222	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E+ RR++ N +fe L+el+P++ +K + a+ + A+eYI++L XP_024989003.1 175 ETKHFASEKHRRQQFNGKFEALKELVPNP-----TKADRASLVGYAIEYINEL 222 689************************.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MMDNSDMFEA SDCFDPNSLT HEDDSFPQPH VSNFHQIPNF SAIEAPGDEL HHRHLITNMD 60 IQQHNWTHND QILMGNDDDC LPTPPPDLLN LFQLPRCSSS ICFSNPTHID QTTMYDPLLP 120 LNLPPHPPFV RELLNSLPNG FNFSGFGEMD MERGDQNQLY HDGDSVLELG EKGKETKHFA 180 SEKHRRQQFN GKFEALKELV PNPTKADRAS LVGYAIEYIN ELKRTVEKLK ILVEKKRCNP 240 SRIKRRKTQD DSTLDVESIY TRSNGDPAND REAINGNSSS TMRSSWLQRK SNNTEIDVRI 300 VDDEVTIKLV QQKKMNCLLL VSKVLDELQL DLHHVAGGVI GDFYSYLFNS KICEGSSVYA 360 SAIANKVIEV VDKQYAT

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MMDNSDMFEA SDCFDPNSLT HEDDSFPQPH VSNFHQIPNF SAIEAPGDEL HHRHLITNMD  60
IQQHNWTHND QILMGNDDDC LPTPPPDLLN LFQLPRCSSS ICFSNPTHID QTTMYDPLLP  120
LNLPPHPPFV RELLNSLPNG FNFSGFGEMD MERGDQNQLY HDGDSVLELG EKGKETKHFA  180
SEKHRRQQFN GKFEALKELV PNPTKADRAS LVGYAIEYIN ELKRTVEKLK ILVEKKRCNP  240
SRIKRRKTQD DSTLDVESIY TRSNGDPAND REAINGNSSS TMRSSWLQRK SNNTEIDVRI  300
VDDEVTIKLV QQKKMNCLLL VSKVLDELQL DLHHVAGGVI GDFYSYLFNS KICEGSSVYA  360
SAIANKVIEV VDKQYAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-72	bHLH family protein