PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988957.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 626aa MW: 71381.1 Da PI: 5.262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	360	402	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ +Lr+l+Pk +Kl+ a+iL+ A+eY+ +L XP_024988957.1 360 VAERKRRKKLNDRLYTLRSLVPKI-----TKLDRASILKDAIEYVMEL 402 68*******************7.....7************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MEGVQEMMER LRSIVGPESW DYCVLWKPSK DQRWIEWVDC CCSGSCGGGE DDEGGGEMVF 60 ECKDVLFQHP TSHACHLLSL LPSSMPFDST GTYGQTMISN QPRWLNFSTS DFSDDQENLG 120 TKALVPVPIG LVELFVSKQI SEDESIINFV TAVFNMPPMD HHPMLNANNN NINMESSFSV 180 NMDGLDDGES KDYLVLEKDP HFQPPISPAT MLENLNLTTP HNINNNANTI SSDLHPMNFL 240 QHFNYSTDHH HDRNTDNTNI MFINHDDPFD PNSQDINVGF DHEIDMALQG QIMNQKQQPH 300 LMDPPLENNN NIAPKKQGNI NNNNDINRSD SVSDCSDQND EEDDPKCRRR NGKPQSKNLV 360 AERKRRKKLN DRLYTLRSLV PKITKLDRAS ILKDAIEYVM ELKRQVEELQ NELEENSDDE 420 GTTNNQSTIV EQEVMHANGS NRKRRYSNGH GMLVNGPPLE AYSGIGTIEV SKHNQDSEDA 480 NEKGQQMEPQ VEVVSLDGNE FFVKVFCEHK MGGFVRLMEA FNSLGLELTN VNVTSFRCLV 540 LNVFKVERKD SEMVQADHVR ESLLEITRNP SKGWPETSTK APENGHGIMD HHHHHHHNHH 600 HNHHPHLHNH QPKPQYHYNA IYQVLN

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MEGVQEMMER LRSIVGPESW DYCVLWKPSK DQRWIEWVDC CCSGSCGGGE DDEGGGEMVF  60
ECKDVLFQHP TSHACHLLSL LPSSMPFDST GTYGQTMISN QPRWLNFSTS DFSDDQENLG  120
TKALVPVPIG LVELFVSKQI SEDESIINFV TAVFNMPPMD HHPMLNANNN NINMESSFSV  180
NMDGLDDGES KDYLVLEKDP HFQPPISPAT MLENLNLTTP HNINNNANTI SSDLHPMNFL  240
QHFNYSTDHH HDRNTDNTNI MFINHDDPFD PNSQDINVGF DHEIDMALQG QIMNQKQQPH  300
LMDPPLENNN NIAPKKQGNI NNNNDINRSD SVSDCSDQND EEDDPKCRRR NGKPQSKNLV  360
AERKRRKKLN DRLYTLRSLV PKITKLDRAS ILKDAIEYVM ELKRQVEELQ NELEENSDDE  420
GTTNNQSTIV EQEVMHANGS NRKRRYSNGH GMLVNGPPLE AYSGIGTIEV SKHNQDSEDA  480
NEKGQQMEPQ VEVVSLDGNE FFVKVFCEHK MGGFVRLMEA FNSLGLELTN VNVTSFRCLV  540
LNVFKVERKD SEMVQADHVR ESLLEITRNP SKGWPETSTK APENGHGIMD HHHHHHHNHH  600
HNHHPHLHNH QPKPQYHYNA IYQVLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	368	RRRNGKPQSKNLVAERKRRKK
2	362	369	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-119	bHLH family protein