PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988946.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 693aa MW: 80661.9 Da PI: 7.5054

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.5	7.4e-07	1	26	66	91
FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vk++kdgkw+++++ ++HnHel p XP_024988946.1 1 MHVKRRKDGKWYIHEFIKDHNHELLP 26 89*********************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MHVKRRKDGK WYIHEFIKDH NHELLPALAY HFRIHKNVKL AEKNNMDILH AVSERTKKMY 60 VQMSRQSGGY SSVGSLRDDL NYQFDRGRYL ALEEGDGQVM LEYFMHIKKE NPNFFYAIDL 120 NEDQRLRNLF WIDAKSRNDY TSFSDVVSFD ISYVRNSDKM PFALFIGVNH HFQAILLGCA 180 LVADESKTTC VWLMKMWLRA MGGKAPKVII TDQGKALEAA TMEVFPLSRH CFSLWSILEK 240 IPESLAHVIR RHDKFMSKFS KCIFKSLNDE EFDMRWWKLV GRFELQENEW FHSLYEDRKK 300 WVPTYMKDTF LAGMSTPQRA ESVNSFFDKY IHKKVTLKEF IRQYGTILQN RYEEEAIADF 360 DTWHKQPALK SPSPWEKQMS SEYTHTIFKK FQVEVLGVVG CHPKREREDG SITIYTVDDC 420 EKAESFMVTW NGMKSEVWCS CLLFEYRGYL CRHAMIVLQI CGFSNIPSCY ILKRWTKDAK 480 NNQSTTEGME RMQTRVQLYN DLCKHAIQLG EEGSLSEESY DIAFRALVEA LKTCVNVNNK 540 ECSNNALSIR DVEEENLGAV SAKTSKRKSA NKKRKVQSEP EPVMLEVRDN LQQMESMSSD 600 GITLHGYYGT QQNVQGLLQL NLMEPPHDGY YVNQQSMQGL GQLNSLAPTH DGFFEAQQSI 660 HGLGHLDFRP PSFGYGMQDE ASLRTNQMHN RHS

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MHVKRRKDGK WYIHEFIKDH NHELLPALAY HFRIHKNVKL AEKNNMDILH AVSERTKKMY  60
VQMSRQSGGY SSVGSLRDDL NYQFDRGRYL ALEEGDGQVM LEYFMHIKKE NPNFFYAIDL  120
NEDQRLRNLF WIDAKSRNDY TSFSDVVSFD ISYVRNSDKM PFALFIGVNH HFQAILLGCA  180
LVADESKTTC VWLMKMWLRA MGGKAPKVII TDQGKALEAA TMEVFPLSRH CFSLWSILEK  240
IPESLAHVIR RHDKFMSKFS KCIFKSLNDE EFDMRWWKLV GRFELQENEW FHSLYEDRKK  300
WVPTYMKDTF LAGMSTPQRA ESVNSFFDKY IHKKVTLKEF IRQYGTILQN RYEEEAIADF  360
DTWHKQPALK SPSPWEKQMS SEYTHTIFKK FQVEVLGVVG CHPKREREDG SITIYTVDDC  420
EKAESFMVTW NGMKSEVWCS CLLFEYRGYL CRHAMIVLQI CGFSNIPSCY ILKRWTKDAK  480
NNQSTTEGME RMQTRVQLYN DLCKHAIQLG EEGSLSEESY DIAFRALVEA LKTCVNVNNK  540
ECSNNALSIR DVEEENLGAV SAKTSKRKSA NKKRKVQSEP EPVMLEVRDN LQQMESMSSD  600
GITLHGYYGT QQNVQGLLQL NLMEPPHDGY YVNQQSMQGL GQLNSLAPTH DGFFEAQQSI  660
HGLGHLDFRP PSFGYGMQDE ASLRTNQMHN RHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein