PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988941.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 806aa MW: 93264.8 Da PI: 7.4078

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.5	9.8e-28	52	139	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + r+ ++++t+Cka+++vk++kdgkw+++++ ++HnHel p XP_024988941.1 52 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDGG---STRRPSVKKTDCKASMHVKRRKDGKWYIHEFIKDHNHELLP 139 5**************************************999888...77778899****************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MNRHLADVID ERSDKDGLIV ASPGRDVTTV EGDKDFELHD GIEFESHEAA YSFYQEYAKS 60 MGFTTSIKNS RRSKKSKEFI DAKFACSRYG VTPESDGGST RRPSVKKTDC KASMHVKRRK 120 DGKWYIHEFI KDHNHELLPA LAYHFRIHKN VKLAEKNNMD ILHAVSERTK KMYVQMSRQS 180 GGYSSVGSLR DDLNYQFDRG RYLALEEGDG QVMLEYFMHI KKENPNFFYA IDLNEDQRLR 240 NLFWIDAKSR NDYTSFSDVV SFDISYVRNS DKMPFALFIG VNHHFQAILL GCALVADESK 300 TTCVWLMKMW LRAMGGKAPK VIITDQGKAL EAATMEVFPL SRHCFSLWSI LEKIPESLAH 360 VIRRHDKFMS KFSKCIFKSL NDEEFDMRWW KLVGRFELQE NEWFHSLYED RKKWVPTYMK 420 DTFLAGMSTP QRAESVNSFF DKYIHKKVTL KEFIRQYGTI LQNRYEEEAI ADFDTWHKQP 480 ALKSPSPWEK QMSSEYTHTI FKKFQVEVLG VVGCHPKRER EDGSITIYTV DDCEKAESFM 540 VTWNGMKSEV WCSCLLFEYR GYLCRHAMIV LQICGFSNIP SCYILKRWTK DAKNNQSTTE 600 GMERMQTRVQ LYNDLCKHAI QLGEEGSLSE ESYDIAFRAL VEALKTCVNV NNKECSNNAL 660 SIRDVEEENL GAVSAKTSKR KSANKKRKVQ SEPEPVMLEV RDNLQQMESM SSDGITLHGY 720 YGTQQNVQGL LQLNLMEPPH DGYYVNQQSM QGLGQLNSLA PTHDGFFEAQ QSIHGLGHLD 780 FRPPSFGYGM QDEASLRTNQ MHNRHS

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MNRHLADVID ERSDKDGLIV ASPGRDVTTV EGDKDFELHD GIEFESHEAA YSFYQEYAKS  60
MGFTTSIKNS RRSKKSKEFI DAKFACSRYG VTPESDGGST RRPSVKKTDC KASMHVKRRK  120
DGKWYIHEFI KDHNHELLPA LAYHFRIHKN VKLAEKNNMD ILHAVSERTK KMYVQMSRQS  180
GGYSSVGSLR DDLNYQFDRG RYLALEEGDG QVMLEYFMHI KKENPNFFYA IDLNEDQRLR  240
NLFWIDAKSR NDYTSFSDVV SFDISYVRNS DKMPFALFIG VNHHFQAILL GCALVADESK  300
TTCVWLMKMW LRAMGGKAPK VIITDQGKAL EAATMEVFPL SRHCFSLWSI LEKIPESLAH  360
VIRRHDKFMS KFSKCIFKSL NDEEFDMRWW KLVGRFELQE NEWFHSLYED RKKWVPTYMK  420
DTFLAGMSTP QRAESVNSFF DKYIHKKVTL KEFIRQYGTI LQNRYEEEAI ADFDTWHKQP  480
ALKSPSPWEK QMSSEYTHTI FKKFQVEVLG VVGCHPKRER EDGSITIYTV DDCEKAESFM  540
VTWNGMKSEV WCSCLLFEYR GYLCRHAMIV LQICGFSNIP SCYILKRWTK DAKNNQSTTE  600
GMERMQTRVQ LYNDLCKHAI QLGEEGSLSE ESYDIAFRAL VEALKTCVNV NNKECSNNAL  660
SIRDVEEENL GAVSAKTSKR KSANKKRKVQ SEPEPVMLEV RDNLQQMESM SSDGITLHGY  720
YGTQQNVQGL LQLNLMEPPH DGYYVNQQSM QGLGQLNSLA PTHDGFFEAQ QSIHGLGHLD  780
FRPPSFGYGM QDEASLRTNQ MHNRHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein