PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988881.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 765aa MW: 86669.5 Da PI: 5.3884

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.3e-29	514	564	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +isl++l++yF +++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_024988881.1 514 ERNISLQVLQQYFPGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 564 579**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence
MDDYTTMFGS IKENSLDFVV TNERSCNDGW LESLNLSSST HLDFSSSYLH SSDIYMPSFD 60 PNLCPEETDM KPLDDYGEVF DDRLVQAIEY LNERCITDTD LLVQLWLPVI RHGKRVLTTE 120 NKPFMLNSDG TSFSNYREVS KSYRFAVEYD STEILGLPSR VFLKKFPTCT LDLRFVTEAN 180 DPRVSYAQKL NLVGCLNLPL FELGGGPCLG VLEVVTTSQK VNFRDELENI YKALEVVDLR 240 TSEFLIHPKL KDFSEPYQVV LAEIRDVLRS ICDTLKLPLA QTWGSCKDSS RAYISIIESA 300 SYVFDPEILG FFEACCDQQL VQGEGIAGKA LGMNQPCFTV DIADFCRADY PLAHQAKMFG 360 MSGAVAIRLR STYTGLMDFI LEFFLPPDCK DHEEQRQMCS SIASMIQHIS WSLHGIDDEE 420 PVEEASFSVK KTNTRDESWI SHMLEAQQRG EKVIVSMGVH KEEPEEGFKV INQFYQGLAF 480 TDPEGQTYLE WGPNSRSQSS SAKRSKEKSR VKIERNISLQ VLQQYFPGSL KDAAKSIGVC 540 PTTLKRICRQ HGIMRWPSRK IKKVSHSLKK LQLVIDSVQG AEGMIKLGSF YTNFPELSCP 600 ISLSPRPKVN DRVNLLKSQT TPSNSSLSSC SHGSSSSLKS CGLQKRPCEV IAPAPKSSSP 660 ISQDECAFRV KATFGEEKIR FRMSKECGFG DLKREITRRF NKYDMEHMTV EYIDDDSDWV 720 LLTCDADLEE CMDLHTSTNN PTIKLFLHRS SFLPMTHPND DIHIW

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence

MDDYTTMFGS IKENSLDFVV TNERSCNDGW LESLNLSSST HLDFSSSYLH SSDIYMPSFD  60
PNLCPEETDM KPLDDYGEVF DDRLVQAIEY LNERCITDTD LLVQLWLPVI RHGKRVLTTE  120
NKPFMLNSDG TSFSNYREVS KSYRFAVEYD STEILGLPSR VFLKKFPTCT LDLRFVTEAN  180
DPRVSYAQKL NLVGCLNLPL FELGGGPCLG VLEVVTTSQK VNFRDELENI YKALEVVDLR  240
TSEFLIHPKL KDFSEPYQVV LAEIRDVLRS ICDTLKLPLA QTWGSCKDSS RAYISIIESA  300
SYVFDPEILG FFEACCDQQL VQGEGIAGKA LGMNQPCFTV DIADFCRADY PLAHQAKMFG  360
MSGAVAIRLR STYTGLMDFI LEFFLPPDCK DHEEQRQMCS SIASMIQHIS WSLHGIDDEE  420
PVEEASFSVK KTNTRDESWI SHMLEAQQRG EKVIVSMGVH KEEPEEGFKV INQFYQGLAF  480
TDPEGQTYLE WGPNSRSQSS SAKRSKEKSR VKIERNISLQ VLQQYFPGSL KDAAKSIGVC  540
PTTLKRICRQ HGIMRWPSRK IKKVSHSLKK LQLVIDSVQG AEGMIKLGSF YTNFPELSCP  600
ISLSPRPKVN DRVNLLKSQT TPSNSSLSSC SHGSSSSLKS CGLQKRPCEV IAPAPKSSSP  660
ISQDECAFRV KATFGEEKIR FRMSKECGFG DLKREITRRF NKYDMEHMTV EYIDDDSDWV  720
LLTCDADLEE CMDLHTSTNN PTIKLFLHRS SFLPMTHPND DIHIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-161	Nin-like family protein