PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988767.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 389aa MW: 43785.1 Da PI: 8.2356

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_024988767.1 66 YVCEICNQGFQRDQNLQMHRRRH 88 9*********************9 PP
2	zf-C2H2	15.7	4.4e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_024988767.1 143 WVCDKCSKGYAVQSDYKAHLKTC 165 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MLDNNDHHHH HHHLTTAPGP SSSSDPFLSP DNGLSNKRKR RPAGTPDPDA EVVSLSPKTL 60 LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRESP EVKKRVFVCP EPSCLHHDPC 120 HALGDLVGIK KHFRRKHSND KQWVCDKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDA CTIRRVHPDL PTFQQACSSR TASSTSPSSE TNLSTIPSLQ RKPQIAPPEP 240 LFSQTQEETP TSLELQLLPS SSSLYEQNDN NQTNLKLSIG SGIGFHKEQE NMKIAMAEKE 300 FAEEARQQAK RQIETAELEF ANAKRIRKQA QAELERAKLL REQATKKISS TILEITCHSC 360 RQRFQAASNN VAAITADEMS SAVTEGEGD

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MLDNNDHHHH HHHLTTAPGP SSSSDPFLSP DNGLSNKRKR RPAGTPDPDA EVVSLSPKTL  60
LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRESP EVKKRVFVCP EPSCLHHDPC  120
HALGDLVGIK KHFRRKHSND KQWVCDKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDA CTIRRVHPDL PTFQQACSSR TASSTSPSSE TNLSTIPSLQ RKPQIAPPEP  240
LFSQTQEETP TSLELQLLPS SSSLYEQNDN NQTNLKLSIG SGIGFHKEQE NMKIAMAEKE  300
FAEEARQQAK RQIETAELEF ANAKRIRKQA QAELERAKLL REQATKKISS TILEITCHSC  360
RQRFQAASNN VAAITADEMS SAVTEGEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	42	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-139	C2H2 family protein