PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988756.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 369aa MW: 41513.6 Da PI: 6.7228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.3e-14	183	229	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_024988756.1 183 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 229 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MCAKREEEIV IEEGDHHHHQ NIQRFQEQQL ILQEIQQQSM GINDYSYSNT RLMFPSSSSS 60 SEISPISNHH QQSSSWSTLP QVFHQNSNFN PLLQYPTRDH DPFLFPPPPP PPPPMSCYGG 120 LFNRRVPGGL QFAYEGGTSS SDHHLRLISE MVQPGSGPFG LQTEMGKMTA QEIMDAKALA 180 ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSIIAEQS 240 PVPTEIDELT VDNASDQDGK LVIRASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG 300 RVKNVLFITA EDHNLNGNDD QQMVNYSINT IQEALKQVME KTNGDDSSSG SVKRQRTNNI 360 NILEHHRSL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MCAKREEEIV IEEGDHHHHQ NIQRFQEQQL ILQEIQQQSM GINDYSYSNT RLMFPSSSSS  60
SEISPISNHH QQSSSWSTLP QVFHQNSNFN PLLQYPTRDH DPFLFPPPPP PPPPMSCYGG  120
LFNRRVPGGL QFAYEGGTSS SDHHLRLISE MVQPGSGPFG LQTEMGKMTA QEIMDAKALA  180
ASKSHSEAER RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSIIAEQS  240
PVPTEIDELT VDNASDQDGK LVIRASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG  300
RVKNVLFITA EDHNLNGNDD QQMVNYSINT IQEALKQVME KTNGDDSSSG SVKRQRTNNI  360
NILEHHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-86	bHLH family protein