PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988667.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 298aa MW: 32915.8 Da PI: 5.6266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.5e-16	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++ + G g+W+ Iar g+ R++k+c++rw +yl XP_024988667.1 26 KGLWSPEEDDKLINYMLKNGQGCWTDIARNAGLQRCGKSCRLRWINYL 73 678*******************************************97 PP
2	Myb_DNA-binding	46.3	1e-14	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E++l+++++ lG++ W+ Ia +++ gRt++++k++w++ XP_024988667.1 79 RGTFSSQEQDLILHLHSILGNR-WSQIAVHLP-GRTDNEIKNFWNS 122 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRKPDQSTAE RQKVCNNDGR MLKVRKGLWS PEEDDKLINY MLKNGQGCWT DIARNAGLQR 60 CGKSCRLRWI NYLRPDLKRG TFSSQEQDLI LHLHSILGNR WSQIAVHLPG RTDNEIKNFW 120 NSTIKKRLKT NKSSDGSSTD VMEGGGMLMM SMHGHEMMTM CIDSCLTSST TSSSSIPMLM 180 NGDGQFGHLP PFALDNTNYS DTDGGSSSSL NLGQGGGYGD CGDVFGMQQN DTTNPALNKR 240 VTEGDVNATD LNGGSDGNME VEEVVGVGKH WVGESFRIGE WDLEGFFTTS SSIPYLDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	2e-67	MYB family protein