PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 609aa MW: 68351.2 Da PI: 6.513 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+ qVk+WFqN+R+++k XP_024988638.1 59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 114 688999***********************************************998 PP | |||||||
2 | START | 223.7 | 5.6e-70 | 248 | 468 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+++ep+Wv s e + +e+lq+f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+tl XP_024988638.1 248 ELAVAAMEELIRMAQSGEPLWVPNSdnssETLSDEEYLQTFPRGIGpkplgLQSEASRESAVVIMNHITLVEILMDVN-QWSNVFSgivsRAMTL 341 57899*****************999998899999*********999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ + + R++++pSg+li++++ng+skvtwvehv XP_024988638.1 342 EVLSTGvagnynGALQVMTAEYQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYSKVTWVEHV 432 ***********************************************************965....8**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++r lv+sgla+gak+wvatl+rqce+ XP_024988638.1 433 EVDDRAVHNIYRLLVNSGLAFGAKRWVATLDRQCER 468 **********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence |
MFQPNMFESH HHILDMSHKT PEHELDMLRD EDYESKSGTD IMEAHSGDDQ DPNQRPNKKK 60 RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLSLEPL QVKFWFQNKR TQMKAQHERH 120 ENTQLRNENE KLRSENIRYK EALANATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLSYPNMS PHGPTRSLDL AVASFSPQQG MVGDMFGAND ILRSVSGPTE 240 ADKPIIIELA VAAMEELIRM AQSGEPLWVP NSDNSSETLS DEEYLQTFPR GIGPKPLGLQ 300 SEASRESAVV IMNHITLVEI LMDVNQWSNV FSGIVSRAMT LEVLSTGVAG NYNGALQVMT 360 AEYQVPSPLV PTRENYFVRY CKQHSDGTWA VVDVSLDNLR PSSISRCRRR PSGCLIQELP 420 NGYSKVTWVE HVEVDDRAVH NIYRLLVNSG LAFGAKRWVA TLDRQCERLA SAMANNIPAG 480 DVGVITTPEG RKSMLKLAER MVLSFCSGVG ASTAHTWTTL SGSGADDVRV MTRKSMNDPG 540 RPPGIVLSAA TSFWIPVQPK RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDQGNCV 600 SLLRVNVSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |