PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988636.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 725aa    MW: 79963.4 Da    PI: 6.1593
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1959114156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  XP_024988636.1  59 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQMK 114
                     688999***********************************************998 PP

2START223.28e-702484681206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+++ep+Wv  s    e +  +e+lq+f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_024988636.1 248 ELAVAAMEELIRMAQSGEPLWVPNSdnssETLSDEEYLQTFPRGIGpkplgLQSEASRESAVVIMNHITLVEILMDVN-QWSNVFSgivsRAMTL 341
                     57899*****************999998899999*********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwvehv
  XP_024988636.1 342 EVLSTGvagnynGALQVMTAEYQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSS----ISRCRRRPSGCLIQELPNGYSKVTWVEHV 432
                     ***********************************************************965....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+++r lv+sgla+gak+wvatl+rqce+
  XP_024988636.1 433 EVDDRAVHNIYRLLVNSGLAFGAKRWVATLDRQCER 468
                     **********************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MFQPNMFESH HHILDMSHKT PEHELDMLRD EDYESKSGTD IMEAHSGDDQ DPNQRPNKKK  60
RYHRHTQHQI QEMESFFKEC PHPDDKQRKE LGRRLSLEPL QVKFWFQNKR TQMKAQHERH  120
ENTQLRNENE KLRSENIRYK EALANATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLSYPNMS PHGPTRSLDL AVASFSPQQG MVGDMFGAND ILRSVSGPTE  240
ADKPIIIELA VAAMEELIRM AQSGEPLWVP NSDNSSETLS DEEYLQTFPR GIGPKPLGLQ  300
SEASRESAVV IMNHITLVEI LMDVNQWSNV FSGIVSRAMT LEVLSTGVAG NYNGALQVMT  360
AEYQVPSPLV PTRENYFVRY CKQHSDGTWA VVDVSLDNLR PSSISRCRRR PSGCLIQELP  420
NGYSKVTWVE HVEVDDRAVH NIYRLLVNSG LAFGAKRWVA TLDRQCERLA SAMANNIPAG  480
DVGVITTPEG RKSMLKLAER MVLSFCSGVG ASTAHTWTTL SGSGADDVRV MTRKSMNDPG  540
RPPGIVLSAA TSFWIPVQPK RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDQGNCV  600
SLLRVNSANS SQSNMLILQE SSSDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA  660
ILPDGPGQHQ GGIAEVGTGG SLLTVAFQIL VDSTPTAKLS LGSVATVNSL IKCTVERIKA  720
AVGSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein