PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988511.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 377aa MW: 43337.4 Da PI: 6.2082

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.7	2.3e-26	269	354	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aLi++r ++++++ + k+ Weev++ + + g++r+pk+Ckekwen+nk+y+++ + k+ +s++ ++yf++le XP_024988511.1 269 RWPKSEVQALITVRAALNQKFNHKGPKGSIWEEVAAGLGRMGYNRTPKKCKEKWENINKYYRRTMDKGKESGGRSTQAWSYFSELE 354 8***************************************************************99999899999****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEVFTGDHGL PSDVVLYPDT HLSPFTLPNA DTFSDQHKIP TDHHHFLPPQ PPQKLRPIRC 60 NGRSFSECCS SDDPLDVKPL SWPPETGFYN TETDDSGFVP PKASTLGLSF EECQTEAALS 120 SSSDEGTKLQ EAIKEPITKK RKRKSRKKLE LFIESMMKTV MEKQEEMHKQ LIEILDKKES 180 ERIMREEAWK QQEIERAKRD EKARAQEISR SLSLISFIQN SLGQEIQIPN PFNASNPNKQ 240 DENQNEESFK CDTGNDNNEE SECDSNIRRW PKSEVQALIT VRAALNQKFN HKGPKGSIWE 300 EVAAGLGRMG YNRTPKKCKE KWENINKYYR RTMDKGKESG GRSTQAWSYF SELEMLYKNG 360 FISGNSHDED QNTKEMH

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEVFTGDHGL PSDVVLYPDT HLSPFTLPNA DTFSDQHKIP TDHHHFLPPQ PPQKLRPIRC  60
NGRSFSECCS SDDPLDVKPL SWPPETGFYN TETDDSGFVP PKASTLGLSF EECQTEAALS  120
SSSDEGTKLQ EAIKEPITKK RKRKSRKKLE LFIESMMKTV MEKQEEMHKQ LIEILDKKES  180
ERIMREEAWK QQEIERAKRD EKARAQEISR SLSLISFIQN SLGQEIQIPN PFNASNPNKQ  240
DENQNEESFK CDTGNDNNEE SECDSNIRRW PKSEVQALIT VRAALNQKFN HKGPKGSIWE  300
EVAAGLGRMG YNRTPKKCKE KWENINKYYR RTMDKGKESG GRSTQAWSYF SELEMLYKNG  360
FISGNSHDED QNTKEMH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	KKRKRK
2	139	147	KKRKRKSRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	6e-53	Trihelix family protein