PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SBP | ||||||||
Protein Properties | Length: 141aa MW: 16008.8 Da PI: 8.4955 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 5.9e-42 | 57 | 133 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++d++++k+yhrrhkvCevh+ka+ v++ g +qrfCqqCsrfh+l+efD++krsCrrrLa+hnerrrk++ XP_024988508.1 57 CCQVEGCTTDMTNCKTYHRRHKVCEVHAKASIVITGGCQQRFCQQCSRFHDLTEFDDAKRSCRRRLAGHNERRRKSS 133 6**************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
METTKSGRVV RSMNDKLKNE MMEDGEEDDD ENFGEGSRKK KVLGKRGSGS GGSIQPCCQV 60 EGCTTDMTNC KTYHRRHKVC EVHAKASIVI TGGCQQRFCQ QCSRFHDLTE FDDAKRSCRR 120 RLAGHNERRR KSSYETYGES S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.1 | 2e-34 | SBP family protein |