PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024988502.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 28130.1 Da PI: 9.7947 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 80 | 127 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+ +ErrRR+riN +++ r l+P K++Ka+ L ++++++k+L+ XP_024988502.1 80 KSHSDAERRRRERINAHLHTFRGLVPCT-----DKMDKATLLAEVIRHVKQLK 127 58*************************7.....6*****************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MDFYTWNQKF SNLGSNRNDR SLGNSDGFSR DCGNADGVFT KSSQSLVLNE QKGELVKADG 60 KVIGKKIGLK SDEKAMAALK SHSDAERRRR ERINAHLHTF RGLVPCTDKM DKATLLAEVI 120 RHVKQLKTDA KEASIGLLIP EDVDELIIEK VNGGLTFRAS ICCKRRPELL TDLRRALDAL 180 KVNIERAELS ALGDHMKIVF YFTRTTTATT DEDLVSFVRE ALNSVIEKAP FSPEYSPRTT 240 LPNKRRRYSL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 86 | 91 | ERRRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 5e-25 | bHLH family protein |