PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988459.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 695aa MW: 81542.9 Da PI: 7.5293

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.4	4.2e-17	97	191	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA++ GF+vr+s++k + +g i ++ fvCs+ g + +++ + +++e r+++ +rtgC+ ++k +++k + ++e ++++++HnH++ XP_024988459.1 97 IYQKYAETSGFEVRRSTQKIN-SDGVIQNKYFVCSRFGLPLKKSFDsmvrrkHQREVRNSNIKRTGCTXSVKFRLMKgTTTYECYDFKEDHNHSF 190 6*************98887.9999*********9999988899988888899***************9*************98 PP FAR1 90 a 90 XP_024988459.1 191 L 191 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MEVVTWEASE EFDVGLSPFK DVQRNCEEIG LVNDIETHVI DDTTSYTSNN EIQNDENPGQ 60 GISISPGGTN WYTPVVEEII KPVIGSVYPS LDVEESIYQK YAETSGFEVR RSTQKINSDG 120 VIQNKYFVCS RFGLPLKKSF DSMVRRKHQR EVRNSNIKRT GCTXSVKFRL MKGTTTYECY 180 DFKEDHNHSF LRHEDMDLTR KGRQMKFSDQ RFVHDAGISN MGATRAHKLH TSLRGGYEYG 240 GPTVVDYQNY KRDCDNFVGR GDAKVLVDLM TKKRDADHNF FFEYNCVGSE LHTIFWVDEV 300 ARFNYSEFGD FSYDLVNNTT FKKQFFKLVW NIHLSRDEFE SRWMVLIEEF SLQDHPWLKD 360 MFALRSQWIP AYFKELPMCC LMKTTYRSES ANSFFNSFSK SGNNLFQFML GFEFALEKQR 420 REQRRLDYHT RTTLPKWLTY SHLERHACEI YTRSVFFEVQ TEIHRAAWTC SIKSVNSNEE 480 AETYIIEHLD KRDEKIAEYK VVRNLKXSTX XCSCNHIGRH GYLCRHXFKV LLNAGVXXIX 540 EEYILRRWRR DLIPIELQNS RQRICDVGED QRRIINDTYE IVDDVLDILX BDXEKLESFV 600 AXLXEMRDBV AKDRTYEPSM KRKERXIEQI LGFTRPBNIE IHXATGIRNK GCGTSKRLIG 660 AAEKATXKSS RPKRMCRGCN MMSNHDIRNC PNKTK

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MEVVTWEASE EFDVGLSPFK DVQRNCEEIG LVNDIETHVI DDTTSYTSNN EIQNDENPGQ  60
GISISPGGTN WYTPVVEEII KPVIGSVYPS LDVEESIYQK YAETSGFEVR RSTQKINSDG  120
VIQNKYFVCS RFGLPLKKSF DSMVRRKHQR EVRNSNIKRT GCTXSVKFRL MKGTTTYECY  180
DFKEDHNHSF LRHEDMDLTR KGRQMKFSDQ RFVHDAGISN MGATRAHKLH TSLRGGYEYG  240
GPTVVDYQNY KRDCDNFVGR GDAKVLVDLM TKKRDADHNF FFEYNCVGSE LHTIFWVDEV  300
ARFNYSEFGD FSYDLVNNTT FKKQFFKLVW NIHLSRDEFE SRWMVLIEEF SLQDHPWLKD  360
MFALRSQWIP AYFKELPMCC LMKTTYRSES ANSFFNSFSK SGNNLFQFML GFEFALEKQR  420
REQRRLDYHT RTTLPKWLTY SHLERHACEI YTRSVFFEVQ TEIHRAAWTC SIKSVNSNEE  480
AETYIIEHLD KRDEKIAEYK VVRNLKXSTX XCSCNHIGRH GYLCRHXFKV LLNAGVXXIX  540
EEYILRRWRR DLIPIELQNS RQRICDVGED QRRIINDTYE IVDDVLDILX BDXEKLESFV  600
AXLXEMRDBV AKDRTYEPSM KRKERXIEQI LGFTRPBNIE IHXATGIRNK GCGTSKRLIG  660
AAEKATXKSS RPKRMCRGCN MMSNHDIRNC PNKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-23	FAR1 family protein