PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27932.1 Da PI: 7.8435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 10 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 WT e d+ + +a ++ + +W++Ia+ + g++ +++k+++ XP_024988449.1 10 VWTREQDKAFENALVTYPDEkskdRWEKIAAVVR-GKSVEEIKHHYE 55 6*****************99**************.**********96 PP | |||||||
2 | Myb_DNA-binding | 43.4 | 7.8e-14 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r +Rt+ q+ s+ qky XP_024988449.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNYVVTRTPTQVASHAQKY 166 6*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MADETVGDSV WTREQDKAFE NALVTYPDEK SKDRWEKIAA VVRGKSVEEI KHHYELLVED 60 LDNIESGLVP LPCYSSSLDD SESHAGDGGT SKKGGNFGQN SSESNHGGKA SKSDQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNY VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS 180 SIHDITSVNN GDVSLPQPPT GVGMTIGQPV GGGPLVSAVG TPVGLAAAPA AHMAYGVGTQ 240 GISSHVKKQV TKLYKQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-100 | MYB family protein |