PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988427.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 402aa MW: 44724.1 Da PI: 6.1303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.2e-05	293	330	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_024988427.1 293 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKLL 330 677888999*****998.....8**************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MAKEIQAVVY GGSWWMSPRT AFNRLSCSSV ITDMENFGPC WPRDLMDIKS KSSDESLDGS 60 MVFQDIRRRP GGGATTMSPD SSFQMMATAF PDSPMTTNPD WNQDLLFSRV QEGLNTFSTS 120 GDGGSKAVTT AEHQRFTMDQ PQSLNFITSS GDPATFPVSS TSYDYPSSLL ETLYDSSPPP 180 PSQHPLYSFE SNSNDFHFVQ SLPSMCPKQQ VSGHLHLTNS IPFWNASTST LESPSQFLPS 240 SYKEKQRSSN LTIQPHHQEI RDSGSTEKKS SGELPFKRPW LETPSPLPTF KVRKEKLGDR 300 ITALQQLVSP FGKTDTASVL HEAIEYIKLL HDQVNILSAP YMKNGLTKQL QQIHDHKVKD 360 TEGPKQDLRS LGLCLVPVSS MFPVAIETTS GFWTPNFEGS FI

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MAKEIQAVVY GGSWWMSPRT AFNRLSCSSV ITDMENFGPC WPRDLMDIKS KSSDESLDGS  60
MVFQDIRRRP GGGATTMSPD SSFQMMATAF PDSPMTTNPD WNQDLLFSRV QEGLNTFSTS  120
GDGGSKAVTT AEHQRFTMDQ PQSLNFITSS GDPATFPVSS TSYDYPSSLL ETLYDSSPPP  180
PSQHPLYSFE SNSNDFHFVQ SLPSMCPKQQ VSGHLHLTNS IPFWNASTST LESPSQFLPS  240
SYKEKQRSSN LTIQPHHQEI RDSGSTEKKS SGELPFKRPW LETPSPLPTF KVRKEKLGDR  300
ITALQQLVSP FGKTDTASVL HEAIEYIKLL HDQVNILSAP YMKNGLTKQL QQIHDHKVKD  360
TEGPKQDLRS LGLCLVPVSS MFPVAIETTS GFWTPNFEGS FI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-62	bHLH family protein