PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988409.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 323aa MW: 36014.2 Da PI: 5.3553

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.1	4.3e-27	34	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + + ++l+ XP_024988409.1 34 RWTRQELLVLIQGKRVAENRVRRGRtavlafgssQVEPKWSSVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEEAESFWLMRNDLR 128 8********************866666666669*******************************************999999999988886 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MALERLTLAP VLLDTADPLP NGAEDINKPP RLPRWTRQEL LVLIQGKRVA ENRVRRGRTA 60 VLAFGSSQVE PKWSSVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKIKEWE SQIKEEAESF 120 WLMRNDLRRE RKLPGFFDRE VYDILDGGGP SSAAGDKSLV LSLAPSNDET ENEAVFDSGR 180 TAAADDGLFS DEVLGTPEKD TDAPTPTPTP TPISATHFEP FSPAAATTQD KSSIPNPEEA 240 HEEGRKRKRP ATDTDTNTNE VEMSIQNQLI EAMERNGRLL SSQLEIQNTN SQLDREQRKD 300 HANSLFAVLN KLADAMVRIA DKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-111	Trihelix family protein