PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024988405.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 315aa    MW: 35942.4 Da    PI: 8.7756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024988405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd++lv +++q G g+W++ + + g+ R++k+c++rw +yl
   XP_024988405.1 13 KGPWTTEEDQKLVSYIEQNGHGSWRALPLKAGLQRCGKSCRLRWTNYL 60
                     79********************************************97 PP
2Myb_DNA-binding49.69e-1666111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++ G++ W++Ia +++ +Rt++++k++w+++l
   XP_024988405.1  66 RGKFSMQEEQTIIQLHALIGNR-WSAIATHLP-KRTDNEIKNYWNTHL 111
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRSPSFVKG LKKGPWTTEE DQKLVSYIEQ NGHGSWRALP LKAGLQRCGK SCRLRWTNYL  60
RPDIKRGKFS MQEEQTIIQL HALIGNRWSA IATHLPKRTD NEIKNYWNTH LKKRLTKMGI  120
DPITHKSRTA GNANLSHMTQ WENARLEAEA RLVHGPRRVP NFYQRIHHGR SPPATNNSFV  180
SSISPQQPLY FDVLKAWQGI NDLSQFMPIL NHVENVEPLS LNDMTTEDPT TNWKIPKIPS  240
NVPETLKDEG NQNEFGVSNM ISEHGYLTDA VTLTNCLGND ARGENRDDDF EEETSYWSNI  300
LDKLGNNSSS FSSVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-87MYB family protein