PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 731aa MW: 80611.2 Da PI: 6.2599 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.6e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+ +++p+ ++r+eL ++l+L+ qVk+WFqN+R++ k XP_024988375.1 63 KKRYHRHTQHQIQEMEAFFKDCPHPDDKQRKELGRRLSLEPLQVKFWFQNKRTQVK 118 688999**********************************************9877 PP | |||||||
2 | START | 213.5 | 7.5e-67 | 251 | 472 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++el+++a+++ep+Wv s e + +de+ + f+++ + ++ea+r+s vv+m++++lve+l+d++ qW++ + +a+t XP_024988375.1 251 ELAVAAMEELIRMAQVGEPLWVPISnnssqETLSEDEYQRAFPRGIGpkpmgLKTEASRESMVVIMNHMTLVEILMDVN-QWSNVFCaivsRATT 344 57899*****************9998988888999999999999998********************************.*****999999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 lev+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+wv+vdvS+ds ++ + + R++++pSg+li++++ng+skvtwveh XP_024988375.1 345 LEVLSTGvagnynGALQVMTAEYQVPSPLVPtRENYFVRYCKQHADGTWVVVDVSLDSLRSSS----ISRCRRRPSGCLIQELPNGYSKVTWVEH 435 ***********************************************************9865....8*************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+++ +h ++++lv+sgla+gak+wvatl+rqce+ XP_024988375.1 436 VEVDTGAVHDIYKVLVNSGLAFGAKRWVATLDRQCER 472 ***********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence |
MFQPSMFESH HHHHLLDQMS HKTPENSLDM LRDHDDHDSR SGTDIIEPPS GDDQDPNQRP 60 NKKKRYHRHT QHQIQEMEAF FKDCPHPDDK QRKELGRRLS LEPLQVKFWF QNKRTQVKAQ 120 HERYDNTNLR NENDKLQAEN MRYKEALANT TCPNCGGPAS IGEMSFDEQQ LRIENARLRE 180 EIDRLSGIAA KFVGKSSLIY PDLSPHGPSR SLDLPTNFSP QHGMVGEMFG TSDLLRSMAG 240 PTEAEKPIII ELAVAAMEEL IRMAQVGEPL WVPISNNSSQ ETLSEDEYQR AFPRGIGPKP 300 MGLKTEASRE SMVVIMNHMT LVEILMDVNQ WSNVFCAIVS RATTLEVLST GVAGNYNGAL 360 QVMTAEYQVP SPLVPTRENY FVRYCKQHAD GTWVVVDVSL DSLRSSSISR CRRRPSGCLI 420 QELPNGYSKV TWVEHVEVDT GAVHDIYKVL VNSGLAFGAK RWVATLDRQC ERLASAMASN 480 IPAGDVGVIS NPEGRKSMLK LAERMVLGFC TGVGASTAHT WTTLSGSGAD DVRVMTRKTT 540 DDAGRPAGIV LCAATSFWLP VPPKQVFNFL RDENSRIEWD ILSNCGLVQK IVHIANGRDP 600 GNYVSLLRIN SANSSQSHML ILQESSCDST GAYVIYAPVD IASMNVALSG ADPDCFALLP 660 SGFAILPDGP GQYEGGDLDV GTGGSLLTIA FQILVDSVPT SKLSLGSVAT VNTLIKCTAE 720 RIKAAAASHN L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |