PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | FAR1 | ||||||||
Protein Properties | Length: 285aa MW: 32689.2 Da PI: 8.7626 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.3 | 7.8e-16 | 51 | 147 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnH 87 ++Y++YA +GF++r s++k++ + g ++ + vC k+gk+++++ + ++++ r+++ + t+Cka+++ k + ++ ++++ + +HnH XP_024988220.1 51 EMYRRYADIAGFDIRLSTQKTR-KGGIVKLKYVVCHKHGKPKKRSVDsvevdgHRRQVRNTNFKVTDCKASVRFKYIEgsQSSYRLYYFCPNHNH 144 58**************987665.78878888889**********9999999988888899999*************999899************* PP FAR1 88 ela 90 +l XP_024988220.1 145 DLI 147 995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MDDLNVVDHF VLPAQGVIGS PCCDGVCIPY VPSEFQPVVG SIFASLEDGI EMYRRYADIA 60 GFDIRLSTQK TRKGGIVKLK YVVCHKHGKP KKRSVDSVEV DGHRRQVRNT NFKVTDCKAS 120 VRFKYIEGSQ SSYRLYYFCP NHNHDLIDDA DRILSRKSRQ VSYDDKVMVH RSAMSNIGPV 180 RAHKLQVCLK GGYDEVGSTV VDYKNFKRDL NNYIGDGDVQ MVVNMLNDRR QYGTNFVFEY 240 KIDNGRLVSM FWANELTRLN YAEFGDVMSF DATYRFNKYV NVMLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-20 | FAR1 family protein |