PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988186.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 410aa MW: 46044.2 Da PI: 6.2012

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.2	4.1e-36	15	105	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+ +++++sws+ g+sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+++ll++ XP_024988186.1 15 FLTKTYEMVDDPLTDHIVSWSHIGTSFVVWNPPEFASELLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANDEFIRGQRHLLKN 100 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_024988186.1 101 IHRRK 105 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MMDGSQGGSN SSPPFLTKTY EMVDDPLTDH IVSWSHIGTS FVVWNPPEFA SELLPKYFKH 60 NNFSSFVRQL NTYGFRKIDP DQWEFANDEF IRGQRHLLKN IHRRKPIHSH SAPPQGSSSS 120 ALSLSEKQEY EDDIKRLKHE TSSLRLQLQR HKNENQENEQ KLTSLRDRLK NIQLRQKKMM 180 SFLAQLLEKP GISSTNNKKR RLLISTYLHD EANADENENP DASPLLNHGL NKLDSSLKFW 240 MDFVTNIVKA SGEETYNFGI VSQPSTLVIP EKRISGDCDS PDLAVSLNHA DSPAVSLIYA 300 NQDSRVKSSG IDVNAEPVAV AEADATATAA ATTGPTVQTG ANDVFWEQFL TETPGGGDTQ 360 EVQSERRDVI NKHDEGNVLG QRKSLWNTNN LDKITEKMGN LSPSDKLDVR

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MMDGSQGGSN SSPPFLTKTY EMVDDPLTDH IVSWSHIGTS FVVWNPPEFA SELLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFANDEF IRGQRHLLKN IHRRKPIHSH SAPPQGSSSS  120
ALSLSEKQEY EDDIKRLKHE TSSLRLQLQR HKNENQENEQ KLTSLRDRLK NIQLRQKKMM  180
SFLAQLLEKP GISSTNNKKR RLLISTYLHD EANADENENP DASPLLNHGL NKLDSSLKFW  240
MDFVTNIVKA SGEETYNFGI VSQPSTLVIP EKRISGDCDS PDLAVSLNHA DSPAVSLIYA  300
NQDSRVKSSG IDVNAEPVAV AEADATATAA ATTGPTVQTG ANDVFWEQFL TETPGGGDTQ  360
EVQSERRDVI NKHDEGNVLG QRKSLWNTNN LDKITEKMGN LSPSDKLDVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	3e-81	HSF family protein