PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024988093.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 752aa MW: 87055.2 Da PI: 9.1764

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024988093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	55	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+++GF+vr +++k++ +ng i +r+fvC++eg+++++ + e++ r+++ +r+gC a++kv ++k ++ +e++++++ HnH+ XP_024988093.1 55 KMYRAYANNAGFDVRLHAKKTN-KNGDIQTRWFVCNREGTPNKQFFDsmdmqsGERRYRNTNLKRCGCLACIKVYLKKdKSGYEIYEFVEAHNHA 148 68***********9987777.7888**********999877888877777888999**********998999*********** PP FAR1 89 la 90 l+ XP_024988093.1 149 LF 150 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MIVSAGVPIL AISEPEPEYV VEECSQGNQF FIPKVDDDLK PNINSHFLTI NEAEKMYRAY 60 ANNAGFDVRL HAKKTNKNGD IQTRWFVCNR EGTPNKQFFD SMDMQSGERR YRNTNLKRCG 120 CLACIKVYLK KDKSGYEIYE FVEAHNHALF NTNDRRFSRK NRQMKYTDYK NVLNSSSYKV 180 GAIRAHRIQT ALNGGFEHNR CSEIDFKNFK RDAVACVGKK DSKMLINKLS NRRDIVPGYF 240 FKYKCNDQEL GAIFWADEVA RLNYKEFGDV ISFDGTFRTN KHAMIFVPFL AVDNHKASVV 300 VGSALISGET IENFTWVLRA FLKCHEKQLV FVITDQCSAM KQVVPLVFTE AKHRLCMWHI 360 MKKVPSKISV ALNQDPLFNK VINKLVWNVN IGPSEFETKW QEMIEQYNLG RDPWFTEMYE 420 IRASWIPAFY KDTPMSGLMK TTSRSESSNS YINIYESYWF DLVQFLNDYD FAIEKQRYKQ 480 AGHETITRTT YPKLFTPLRL ESQASRVYSR NVFFDIQKEI KKAVWSCSIE TGECRGDLKM 540 FIISHKKKKS HVNTTYLVSR NYTANTVECE CNLFTRNGYL CRHAFKVLIN DEVESIPNQY 600 VLRRWKQNLV PVQIQSAKIR YGEVDADKDK SIIDVYSKVD HIISIARNDK SILTRLEQNL 660 DNFTVDIEKE VPYEDPSQQK FDAIRDHLGV SIPDDVDILP PSGIRNKGCG TGKRLVSVSE 720 KIQSVSKKAR RKCATCGQRT GHDSRNCPQL IX

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MIVSAGVPIL AISEPEPEYV VEECSQGNQF FIPKVDDDLK PNINSHFLTI NEAEKMYRAY  60
ANNAGFDVRL HAKKTNKNGD IQTRWFVCNR EGTPNKQFFD SMDMQSGERR YRNTNLKRCG  120
CLACIKVYLK KDKSGYEIYE FVEAHNHALF NTNDRRFSRK NRQMKYTDYK NVLNSSSYKV  180
GAIRAHRIQT ALNGGFEHNR CSEIDFKNFK RDAVACVGKK DSKMLINKLS NRRDIVPGYF  240
FKYKCNDQEL GAIFWADEVA RLNYKEFGDV ISFDGTFRTN KHAMIFVPFL AVDNHKASVV  300
VGSALISGET IENFTWVLRA FLKCHEKQLV FVITDQCSAM KQVVPLVFTE AKHRLCMWHI  360
MKKVPSKISV ALNQDPLFNK VINKLVWNVN IGPSEFETKW QEMIEQYNLG RDPWFTEMYE  420
IRASWIPAFY KDTPMSGLMK TTSRSESSNS YINIYESYWF DLVQFLNDYD FAIEKQRYKQ  480
AGHETITRTT YPKLFTPLRL ESQASRVYSR NVFFDIQKEI KKAVWSCSIE TGECRGDLKM  540
FIISHKKKKS HVNTTYLVSR NYTANTVECE CNLFTRNGYL CRHAFKVLIN DEVESIPNQY  600
VLRRWKQNLV PVQIQSAKIR YGEVDADKDK SIIDVYSKVD HIISIARNDK SILTRLEQNL  660
DNFTVDIEKE VPYEDPSQQK FDAIRDHLGV SIPDDVDILP PSGIRNKGCG TGKRLVSVSE  720
KIQSVSKKAR RKCATCGQRT GHDSRNCPQL IX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	546	551	KKKKSH
2	547	552	KKKKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-68	FAR1 family protein