PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024988066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28079.9 Da PI: 7.2652 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+ +++++G +W+ ++ g+ R++k+c++rw +yl XP_024988066.1 14 KGSWSLEEDHKLISYINRYGIWNWSQMPKFAGLSRSGKSCRLRWTNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEde +++ + lG++ W++Ia++++ gRt++++k++w++ XP_024988066.1 67 RGNFSKEEDETILHSHSILGNR-WSAIASRLP-GRTDNEIKNHWHT 110 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MRNASCEMNK GLKKGSWSLE EDHKLISYIN RYGIWNWSQM PKFAGLSRSG KSCRLRWTNY 60 LKPNVKRGNF SKEEDETILH SHSILGNRWS AIASRLPGRT DNEIKNHWHT RLKKRGTYNL 120 VHETTKPNRT SISSDFEVNN VQNIQQRVNH VNGIIPSQSS WTYEDDGSSS NSSSTFIDQE 180 VDFKADYYDI GSPGNTVDDL HCFWKQLCPI EKLELGNTWG LDSESIFQEP YHDLICXNSE 240 QLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 8e-52 | MYB family protein |