PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20367.2 Da PI: 8.1289 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.3 | 9.5e-37 | 21 | 109 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf ++q ++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v+ i +lqqq + XP_024987960.1 21 PCGACKFLRRKCVAECIFAPYFVSDQgVSHFAAVHKVFGASNVTKLLLHIPVNKRRDAVITICYEAQARLRDPVYGCVAQIVALQQQSD 109 7***********************9977**********************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MSTSSSNGGG GGGGGGGGGG PCGACKFLRR KCVAECIFAP YFVSDQGVSH FAAVHKVFGA 60 SNVTKLLLHI PVNKRRDAVI TICYEAQARL RDPVYGCVAQ IVALQQQSDG EVRTLYRAVE 120 SHWFRFLIFL PLMLSSPNGD IMGTLIEDSE KGLFEVGLHY REKEPELKER SRRWEAGKEF 180 ITPNDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-49 | LBD family protein |