PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987896.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 235aa MW: 26133.5 Da PI: 9.4269

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.1	3.2e-34	36	132	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+C+++r+kC+++Cvlap fpae++++f++vhk+FG+snv+kl+k+l++e+ ++a++sl++eA++r++dPv G +g +++++++l+ ka+ + XP_024987896.1 36 ACASCRHQRKKCTEKCVLAPFFPAEKTQDFQAVHKVFGVSNVTKLVKDLRREDGKKAVDSLIWEANCRLKDPVLGPLGEFQRVSEELRVYKAQYQ 130 7***************************************************************************************9999887 PP DUF260 96 ll 97 ++ XP_024987896.1 131 QA 132 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MQKSHNSTIP NATLRVLEAA PSPSPPPTTS GGGVPACASC RHQRKKCTEK CVLAPFFPAE 60 KTQDFQAVHK VFGVSNVTKL VKDLRREDGK KAVDSLIWEA NCRLKDPVLG PLGEFQRVSE 120 ELRVYKAQYQ QAIHHHHHLR QVPITQSGVL YNNKSGQQRL IGSWNGGDSN GINNGTMLDY 180 IHSNGIGGGG GIDNSRMFNY ASLQNMEKLK QERDQQQGSL IHPQQQIMNE FGQFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-40	LBD family protein