PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 28433.9 Da PI: 7.9522 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.1 | 4.2e-31 | 54 | 150 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+C ++r kC+++Cvlap fpae++++f++vhk+FG+snv+ l+k+l++e+ ++a++sl+ eA++r++dPv G +g +++++++l+ ka+ + XP_024987895.1 54 ACASCGHQRTKCTEKCVLAPFFPAEKTQDFQAVHKVFGVSNVTTLVKDLRREDGKKAVDSLIREANCRLKDPVLGPLGEFQRISEELRDYKAQYQ 148 7*****************************************************************************************99987 PP DUF260 96 ll 97 ++ XP_024987895.1 149 QA 150 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MADVGGVGRA EEITILHNYL EKYPKRYWEV RVLEAAVSPS PPPTATTSGG GVPACASCGH 60 QRTKCTEKCV LAPFFPAEKT QDFQAVHKVF GVSNVTTLVK DLRREDGKKA VDSLIREANC 120 RLKDPVLGPL GEFQRISEEL RDYKAQYQQA IHHHHHHLRQ VPITQSGVLY NNKSRQQRLI 180 GYWNGGDNNG INNGTMLDYI HSNGIGGGGG IDNSQMFNYA SLQNMEKLKQ EQDQQQGSLI 240 HPQQQIMNEF GQFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-35 | LBD family protein |