PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987850.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 303aa MW: 34002.9 Da PI: 7.5884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	132	151	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ XP_024987850.1 132 FSCTVCNKTFNRYNNMQMHM 151 89*****************9 PP
2	zf-C2H2	11.2	0.0011	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F + + ++H +++ XP_024987850.1 217 FGCRKCRKPFAVRGDWRTHEKNC 239 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MSTTSESNGY LEGDEVDEDS ILLSLCLPGQ PQHHDVVSKS NYHHSNISSP NHYSSHRNPD 60 KDLNLNLNLN ASIDSGEDGV TVALHIGQPP TADGGGTSSF SPNPNPNISI APEHLQYWIP 120 TPAQIMVGPT QFSCTVCNKT FNRYNNMQMH MWGHGSQYRK GPESLRGTKP ASSMLRLPCY 180 CCAEGCKNNI EHPRSKPLKD FRTLQTHYKR KHGEKPFGCR KCRKPFAVRG DWRTHEKNCG 240 KLWYCVCGSD FKHKRSLKDH VHAFGNGHAP HYTSEDLIEV DENENVGEEQ EDKRIGGSFP 300 KFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-114	C2H2 family protein