PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987842.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 35997.2 Da PI: 6.9465

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.4e-18	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LAk lgL+ rq+ +WFqNrRa++k XP_024987842.1 86 KKRRLKMEQVKTLERNFELGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWK 139 4568999**********************************************9 PP
2	HD-ZIP_I/II	127.2	7.3e-41	85	177	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kL+perK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++da+k++n++L +++ +L++++++ XP_024987842.1 85 EKKRRLKMEQVKTLERNFELGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQFDAIKAQNDSLLSQNLKLHAQIMT 177 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MTCTGMAFFP TNFMLQASHH DEDDHHTPHS LSPLLPPCTT THDFHGSFLG KRSMRFAGTE 60 VCDDETNNNI HGEDELSDDG LVGGEKKRRL KMEQVKTLER NFELGNKLDP ERKMQLAKAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KKQFDAIKAQ NDSLLSQNLK LHAQIMTLKN 180 KDPMESINLN IKETEGSCSN RSENSSEIKL DISTTHAPID SPLSSHHNHQ QPIPNLFPSA 240 NVDHRSHHHH HHHDQIFQNS SSRLLVDHHH HHLLHGRKAD QSVAVKEESL CNMFVGIEDQ 300 SGFWPWLEQP QFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KKRRLK
2	134	142	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-102	HD-ZIP family protein