PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28397.1 Da PI: 9.7971 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.5 | 2e-17 | 146 | 197 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +q + Lee F++n ++ ++++eLA kl L+ rqV vWFqNrRa+ k XP_024987816.1 146 IRLSVDQSRLLEESFQQNYRLNPKMKQELAGKLMLKPRQVEVWFQNRRARNK 197 568899********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110 | 1.7e-35 | 144 | 230 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk rls +q++lLEesF+++ +L+p+ K+ela +L l+prqv+vWFqnrRAR k+kq+E +ye+Lkr++++l+e+n++L+ke eeL+ XP_024987816.1 144 KKIRLSVDQSRLLEESFQQNYRLNPKMKQELAGKLMLKPRQVEVWFQNRRARNKLKQTEIKYEYLKRCFESLAEQNKKLHKELEELT 230 89***********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MEKKIDDGGC VEREDRSSQV GIGDRGDGEE RSVVVICWRP GSTKTKTKGW GEGIEGPWDF 60 RAFEVSKLGL RTLGLSGLEL VRTGDDKREK GNESNVVRRK FDINKVPSEE QWITTTIGGN 120 EEESATTIGI SKATNGGGGG PPMKKIRLSV DQSRLLEESF QQNYRLNPKM KQELAGKLML 180 KPRQVEVWFQ NRRARNKLKQ TEIKYEYLKR CFESLAEQNK KLHKELEELT TTRVGSSTMF 240 SPVVASPSHH PS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 200 | RRARNKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-43 | HD-ZIP family protein |