PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987787.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 364aa MW: 40280.2 Da PI: 6.3727

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	294	328	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_024987787.1 294 KWPYPSEAQKLALAESTGLDQKQINNWFINQRKRH 328 569*****************************885 PP
2	ELK	41.1	3.7e-14	248	269	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_024987787.1 248 ELKGQLLRKYSGYLGSLKQEFM 269 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDGHAGGGGG GTSSLMGFGE NNSLNRSSNG DNNNSIGSLC LPPPVIYNNT LIFSTQDHHH 60 HHNNCGTSAS AMMLEDNNNS NINDGGGLGF ISSSSSCSSS VKAKIMSHPH YPRLLSAYLN 120 CQKIGAPPEV VERLEEACRA SVMMAGRAST GGGGGGMNTT IVGQDPALDQ FMEAYCEMLI 180 KYEQELSKPF KEAMLFLSRI ESQFKAISFS TSDSACGEGG MDRNVSSEEE VDVDVNNNMV 240 DPQAEDRELK GQLLRKYSGY LGSLKQEFMK KRKKGKLPKE ARQQLLDWWT RHYKWPYPSE 300 AQKLALAEST GLDQKQINNW FINQRKRHWK PSEDMQFVVM DAAHPHYFMD NIFGNPYPMD 360 VSLL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDGHAGGGGG GTSSLMGFGE NNSLNRSSNG DNNNSIGSLC LPPPVIYNNT LIFSTQDHHH  60
HHNNCGTSAS AMMLEDNNNS NINDGGGLGF ISSSSSCSSS VKAKIMSHPH YPRLLSAYLN  120
CQKIGAPPEV VERLEEACRA SVMMAGRAST GGGGGGMNTT IVGQDPALDQ FMEAYCEMLI  180
KYEQELSKPF KEAMLFLSRI ESQFKAISFS TSDSACGEGG MDRNVSSEEE VDVDVNNNMV  240
DPQAEDRELK GQLLRKYSGY LGSLKQEFMK KRKKGKLPKE ARQQLLDWWT RHYKWPYPSE  300
AQKLALAEST GLDQKQINNW FINQRKRHWK PSEDMQFVVM DAAHPHYFMD NIFGNPYPMD  360
VSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	273	LKQEFMKKRK
2	270	274	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-123	TALE family protein