PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987777.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 478aa MW: 53415.9 Da PI: 6.2037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	37	81	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + + +G+++W+ +a+++ +t qc+ rw++yl XP_024987777.1 37 SWSQEEDDILREQIGIHGTDNWAVVASKFK-DKTTRQCRRRWFTYL 81 6**************************9.***********97 PP
2	Myb_DNA-binding	43.2	9.2e-14	87	130	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_024987777.1 87 KGGWSQEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 130 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MQNMKKKACD STSSSNNNNG DGGGGEVQKQ KERHIVSWSQ EEDDILREQI GIHGTDNWAV 60 VASKFKDKTT RQCRRRWFTY LNSDFKKGGW SQEEDMLLCE AQKIFGNRWT EIAKVVSGRT 120 DNAVKNRFST LCKKRAKNEA LAKDNSASYI TANNKRAMFH NGQDADRNLE TSMPPAKTRR 180 KHIPDTTENC NLEESTGTFR TTDQQLRPPF AVLLQNCHNI NTLRTQLHAK TEEASKDGTF 240 LKKDDPKIIA LLQQAELLSS LALKVNMEKT EESYETACKA VQDFLKQNKG SDVLGFNVSD 300 IDFQLENIKD LVEDIKSCDG GSQQSWRQPD LYQGSPDSSE YSTGSTVLSQ VIEKMEPLQE 360 GLCEVEPQTT QVIQPTSIVN GKNVMIPDST TNQVLLASCD EFDNDVGAIF PLPNSEFNSP 420 LQVTPLFRSL AAGIPSPQFS ESERNFLLKT LGIESPPVKP GTRTSQPPPC KRALLHCL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MQNMKKKACD STSSSNNNNG DGGGGEVQKQ KERHIVSWSQ EEDDILREQI GIHGTDNWAV  60
VASKFKDKTT RQCRRRWFTY LNSDFKKGGW SQEEDMLLCE AQKIFGNRWT EIAKVVSGRT  120
DNAVKNRFST LCKKRAKNEA LAKDNSASYI TANNKRAMFH NGQDADRNLE TSMPPAKTRR  180
KHIPDTTENC NLEESTGTFR TTDQQLRPPF AVLLQNCHNI NTLRTQLHAK TEEASKDGTF  240
LKKDDPKIIA LLQQAELLSS LALKVNMEKT EESYETACKA VQDFLKQNKG SDVLGFNVSD  300
IDFQLENIKD LVEDIKSCDG GSQQSWRQPD LYQGSPDSSE YSTGSTVLSQ VIEKMEPLQE  360
GLCEVEPQTT QVIQPTSIVN GKNVMIPDST TNQVLLASCD EFDNDVGAIF PLPNSEFNSP  420
LQVTPLFRSL AAGIPSPQFS ESERNFLLKT LGIESPPVKP GTRTSQPPPC KRALLHCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-153	MYB family protein