PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987775.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 283aa MW: 31367.8 Da PI: 10.2608

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	2.8e-41	27	103	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adl +++eyhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ XP_024987775.1 27 CLVDGCNADLGQCREYHRRHKVCELHSKTPKVTIGGREQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQS 103 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MEFSSSSSKR AKTPAGGSNN LSISVSCLVD GCNADLGQCR EYHRRHKVCE LHSKTPKVTI 60 GGREQRFCQQ CSRFHSLGEF DEGKRSCRKR LDGHNRRRRK PQSDSISRTT ANFLSSQQGI 120 ARILSFNSPQ IQLSSVVGST RATSFKPENP IGPFNNQPPL NYHTRHHLNL ESSTTPVVQN 180 SSDNHFNFFQ HRSPPLAVSS NRAGNSRALS LLSSPPPAHQ TMATTMFIPS GIPQYGFAHE 240 MQNETILSGS SATTLQFQGM FHDDQDDSSS SGIKQQTLSF RWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	101	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-47	SBP family protein