PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987600.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 265aa    MW: 30192.6 Da    PI: 6.5069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lvd+v+ +G  +W+  +++ g+ R++k+c++rw +yl
   XP_024987600.1 14 KGTWTPEEDKKLVDYVATYGCWNWRQLPKHAGLSRCGKSCRLRWINYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding57.72.7e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEd+l++++++ lG++ W++Ia +++ gRt++++k++w++
   XP_024987600.1  67 RGNFSKEEDKLILELHQSLGNR-WSSIAIHLP-GRTDNEIKNHWHS 110
                      89********************.*********.***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MVRTPSCDKN GLKKGTWTPE EDKKLVDYVA TYGCWNWRQL PKHAGLSRCG KSCRLRWINY  60
LRPNVKRGNF SKEEDKLILE LHQSLGNRWS SIAIHLPGRT DNEIKNHWHS SLKNRSAASK  120
SNSTVGNSFK RTTCSKEEKA NEAFNIDSVL DQATQNILES TPILTCRQPS SSTLSSSNTA  180
SSSTNYKGSG VEDDACSRQV IEEKIDDFWT EPFLQDFDGN INCTTDNFLK PLLELGILYP  240
PFPIDDEETF WFYGLHSENT NEVQW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-56MYB family protein