PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987592.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 300aa    MW: 33768.5 Da    PI: 9.7242
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-32143199158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++p+YVNaKQy++Il+RRq+Rak+e +kk+ +ksrkpylheSRh+hA++R+Rg+gGrF
  XP_024987592.1 143 EDPVYVNAKQYHGILRRRQSRAKAELKKKV-IKSRKPYLHESRHQHAMKRARGCGGRF 199
                     58****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPAKPQDEDR RREAEEQNIS PSAVYSQPWW HGIGNGVMSS FGETNGVIKV GAQLQTTSDA  60
VAEDTDASTV PQSGLNMNNG QEQQVKQVET SSPMELVGHS IVLTSYPYQD THFTGMMTYG  120
TQAHPRLLGI HQTRMPLPLQ TEEDPVYVNA KQYHGILRRR QSRAKAELKK KVIKSRKPYL  180
HESRHQHAMK RARGCGGRFL NTKKLGSDST ANSTAQKEPK SMSTQSFNSD HLSTDYAGNS  240
SIFEDVLKRN TSSNGNNNDH HSLSSTYNFH LMGREEGVHY FKREKGNMVN QVPKRDPYYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.28e-44NF-YA family protein